View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_high_12 (Length: 294)

Name: NF17934_high_12
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_high_12
NF17934_high_12
[»] scaffold0075 (1 HSPs)
scaffold0075 (15-230)||(26402-26621)
[»] scaffold0203 (1 HSPs)
scaffold0203 (15-230)||(2159-2375)
[»] chr4 (16 HSPs)
chr4 (15-232)||(14873913-14874131)
chr4 (231-278)||(22718110-22718157)
chr4 (231-278)||(22987059-22987106)
chr4 (231-278)||(39701117-39701164)
chr4 (231-278)||(52573436-52573483)
chr4 (231-278)||(3032753-3032800)
chr4 (231-278)||(10408060-10408107)
chr4 (235-278)||(27069122-27069165)
chr4 (231-278)||(27891792-27891839)
chr4 (231-278)||(39666947-39666994)
chr4 (231-278)||(45463244-45463291)
chr4 (231-278)||(11524120-11524167)
chr4 (231-278)||(50503996-50504043)
chr4 (231-273)||(9731388-9731430)
chr4 (231-277)||(51859615-51859661)
chr4 (231-278)||(54858768-54858815)
[»] chr1 (10 HSPs)
chr1 (29-230)||(20121055-20121259)
chr1 (231-278)||(8898725-8898772)
chr1 (231-278)||(40714652-40714699)
chr1 (231-278)||(7371461-7371508)
chr1 (231-278)||(28325012-28325059)
chr1 (231-278)||(31058228-31058275)
chr1 (231-278)||(49955555-49955602)
chr1 (238-278)||(45750013-45750053)
chr1 (239-278)||(17189125-17189164)
chr1 (231-278)||(30326667-30326714)
[»] scaffold0010 (1 HSPs)
scaffold0010 (15-230)||(136051-136267)
[»] scaffold0599 (1 HSPs)
scaffold0599 (231-278)||(2601-2648)
[»] scaffold0328 (1 HSPs)
scaffold0328 (231-278)||(11311-11358)
[»] chr8 (10 HSPs)
chr8 (231-278)||(27500259-27500306)
chr8 (231-278)||(6471898-6471945)
chr8 (231-278)||(15230102-15230149)
chr8 (231-278)||(21432864-21432911)
chr8 (231-278)||(37542395-37542442)
chr8 (235-278)||(38003626-38003669)
chr8 (231-278)||(44664716-44664763)
chr8 (231-278)||(25124734-25124781)
chr8 (231-274)||(41353749-41353792)
chr8 (231-278)||(7983599-7983646)
[»] chr7 (10 HSPs)
chr7 (231-278)||(32068267-32068314)
chr7 (231-278)||(42618082-42618129)
chr7 (231-278)||(43266474-43266521)
chr7 (231-272)||(10600126-10600167)
chr7 (231-277)||(22081767-22081814)
chr7 (231-278)||(23058600-23058647)
chr7 (231-278)||(25628686-25628733)
chr7 (231-278)||(32934519-32934566)
chr7 (231-278)||(25453299-25453346)
chr7 (194-232)||(8105665-8105703)
[»] chr5 (5 HSPs)
chr5 (231-278)||(17544219-17544266)
chr5 (231-278)||(33871510-33871557)
chr5 (231-278)||(20153089-20153136)
chr5 (231-278)||(22298713-22298760)
chr5 (239-278)||(20152951-20152990)
[»] chr3 (14 HSPs)
chr3 (231-278)||(3469408-3469455)
chr3 (231-278)||(11910907-11910954)
chr3 (231-278)||(10294768-10294815)
chr3 (231-278)||(10307583-10307630)
chr3 (235-278)||(29686153-29686196)
chr3 (231-278)||(41422143-41422190)
chr3 (231-278)||(52032346-52032394)
chr3 (231-278)||(13948951-13948998)
chr3 (231-278)||(29118709-29118756)
chr3 (231-278)||(40788591-40788638)
chr3 (231-278)||(43998316-43998363)
chr3 (231-278)||(3596280-3596327)
chr3 (231-278)||(32306632-32306679)
chr3 (184-232)||(16346077-16346125)
[»] scaffold0042 (1 HSPs)
scaffold0042 (231-278)||(11951-11998)
[»] scaffold0006 (1 HSPs)
scaffold0006 (235-278)||(222001-222044)
[»] chr6 (9 HSPs)
chr6 (231-278)||(7161012-7161059)
chr6 (231-278)||(7905414-7905461)
chr6 (231-278)||(10781366-10781413)
chr6 (231-278)||(15913719-15913766)
chr6 (231-278)||(22502945-22502992)
chr6 (235-278)||(31407049-31407092)
chr6 (231-278)||(6517673-6517720)
chr6 (231-278)||(21836238-21836285)
chr6 (231-270)||(12065428-12065467)
[»] chr2 (4 HSPs)
chr2 (231-278)||(8710639-8710686)
chr2 (231-278)||(8342358-8342405)
chr2 (231-278)||(15604510-15604557)
chr2 (194-230)||(6050980-6051016)
[»] scaffold0771 (1 HSPs)
scaffold0771 (231-278)||(1091-1138)
[»] scaffold0388 (1 HSPs)
scaffold0388 (231-278)||(12410-12457)


Alignment Details
Target: scaffold0075 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 26402 - 26621
Alignment:
Q  15 tatcaaggaacgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26402 tatcaaggaacgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaag 26501  T
Q  115 caagatgacacg--nnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgctaatatttgttttatagaattccttccacatgctta 210  Q
    ||||||||||||          |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26502 caagatgacacgttttttttttcatgcataaagagtatgcatggagtgtgcaaccacataatgctaatatttgttttatagaattccttccacatgctta 26601  T
Q  211 atgagcttatgatcacatca 230  Q
    ||||||||||||||||||||    
T  26602 atgagcttatgatcacatca 26621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 2159 - 2375
Alignment:
Q  15 tatcaaggaacgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaag 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  2159 tatcaaggaacgtaagttgcatggacctattattaaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatatccaatctgaag 2258  T
Q  115 caagatgacacgnnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgcta-atatttgttttatagaattccttccacatgcttaa 211  Q
    ||||||||||||        |||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2259 caagatgacacg-tctttttcatgcataaagagtatgcatggagtgtgcaaacacataatgctatatattt-ttttatagaattccttccacatgcttaa 2356  T
Q  212 tgagcttatgatcacatca 230  Q
    ||||||||||||| |||||    
T  2357 tgagcttatgatctcatca 2375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 14873913 - 14874131
Alignment:
Q  15 tatcaaggaacgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||    
T  14873913 tatcaaggaacgtaagttgcatggacctattattgaaatatcaaccttattcgaaacaaagatgaaatattgaacataattaaatatatccaatctgaag 14874012  T
Q  115 caagatgacacgnnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgcta-atatttgttttatagaattccttccacatgcttaa 211  Q
    |||||||||||         |||||||||||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  14874013 caagatgacac-atctttttcatgcataaagagtatgcatggagtgtgcaaacaaataatgctatatattt-ttttatagaattccttccacatgcttaa 14874110  T
Q  212 tgagcttatgatcacatcatt 232  Q
    ||||||||||||| |||||||    
T  14874111 tgagcttatgatctcatcatt 14874131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 22718157 - 22718110
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22718157 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 22718110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 22987059 - 22987106
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22987059 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 22987106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 39701117 - 39701164
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39701117 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 39701164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 52573436 - 52573483
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52573436 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 52573483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 3032800 - 3032753
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3032800 ttacccctgtcttcatcttcttctcataataaagacgagtgtattttt 3032753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 10408107 - 10408060
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10408107 ttacccctgtcttcatcttcttctcataataaagatgagggtattttt 10408060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 27069122 - 27069165
Alignment:
Q  235 ccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27069122 ccctgtcttcatcttcttctcataataaagacgagggtattttt 27069165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 27891792 - 27891839
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27891792 ttacctctgtcttcatcttcttctcataataaagacgagggtattttt 27891839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 39666994 - 39666947
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  39666994 ttacccttgtcttcatcttcttctcataataaagacgagggtattttt 39666947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 45463291 - 45463244
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45463291 ttacccctgtctttatcttcttctcataataaagacgagggtattttt 45463244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 11524167 - 11524120
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  11524167 ttacccctatcttcatcttcttcccataataaagacgagggtattttt 11524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 50504043 - 50503996
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  50504043 ttacccatgtcttcatcttcttctcatattaaagacgagggtattttt 50503996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 9731430 - 9731388
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggta 273  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  9731430 ttacccttgtcttcatcttcttctcataataaagacgagggta 9731388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 51859615 - 51859661
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtatttt 277  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||    
T  51859615 ttacccctgtcttcatcttcttctcataataaaaatgagggtatttt 51859661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 54858768 - 54858815
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||| || ||||||| |||| ||||||||||||||||||    
T  54858768 ttacccctgtcttaattttcttcttataagaaagacgagggtattttt 54858815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 20121259 - 20121055
Alignment:
Q  29 agttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaagcaagatgacacgnn 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |      
T  20121259 agttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatatccaatctgaagcaagatgacatg-t 20121161  T
Q  129 nnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgc--taatatttgttttatagaattccttccacatgcttaatgagcttatgatc 224  Q
          |||||||||||||||||||||||  |||||||||||||||||  || | ||| |||||||||||||||||||||||||||||||||||||||||    
T  20121160 ctttttcatgcataaagagtatgcatggagtgtgcaaacacataatgctatatttttttttttatagaattccttccacatgcttaatgagcttatgatc 20121061  T
Q  225 acatca 230  Q
     |||||    
T  20121060 tcatca 20121055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 8898725 - 8898772
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8898725 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 8898772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 40714652 - 40714699
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40714652 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 40714699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 7371508 - 7371461
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  7371508 ttacccctttcttcatcttcttctcataataaagacgagggtattttt 7371461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 28325012 - 28325059
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  28325012 ttacccctgtcttcatcttcttctcataataaagacgaggatattttt 28325059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 31058275 - 31058228
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31058275 ttacccctgtcttcatcttcttctcataataaagacgagagtattttt 31058228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 49955555 - 49955602
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49955555 ttacccctgtcttcatctttttctcataataaagacgagggtattttt 49955602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 45750053 - 45750013
Alignment:
Q  238 tgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45750053 tgtcttcatcttcttctcataataaagacgagggtattttt 45750013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 17189164 - 17189125
Alignment:
Q  239 gtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17189164 gtcttcatcttcttctcataataaagacgagggtattttt 17189125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 30326714 - 30326667
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| |||||||||||| |||||||||||||||||| | |||||||    
T  30326714 ttacccatgtcttcatcttattctcataataaagacgatgatattttt 30326667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 136267 - 136051
Alignment:
Q  15 tatcaaggaacgtaagttgcatggacctattattgaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatattcaatctaaag 114  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  136267 tatcaaggagcgtaagttgcatggacctattatttaaatatcaaccttattccaaacaaagatgaaatattgaacataattaaatatatccaatctgaag 136168  T
Q  115 caagatgacacgnnnnnnnncatgcataaagagtatgcatgga--gtgcaaacacataatgcta-atatttgttttatagaattccttccacatgcttaa 211  Q
    ||||||||||||        |||||||||||||| ||||||||  ||||||||||||||||||| |||||| |||||||   ||||||||||||||||||    
T  136167 caagatgacacg-tctttttcatgcataaagagtttgcatggagtgtgcaaacacataatgctatatattt-ttttatatgtttccttccacatgcttaa 136070  T
Q  212 tgagcttatgatcacatca 230  Q
    ||||||  ||||| |||||    
T  136069 tgagctcttgatctcatca 136051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 2601 - 2648
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 2648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 11358 - 11311
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11358 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 11311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 27500306 - 27500259
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27500306 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 27500259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 6471898 - 6471945
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6471898 ttacccctgtcttcatcttcttctcattataaagacgagggtattttt 6471945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 15230149 - 15230102
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15230149 ttacccctgtcttcatcttcttctcataataaagatgagggtattttt 15230102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 21432911 - 21432864
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  21432911 ttacccctgtcttcatcttcttctcataataaagacgatggtattttt 21432864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 37542442 - 37542395
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  37542442 ttacccctgtgttcatcttcttctcataataaagacgagggtattttt 37542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 38003669 - 38003626
Alignment:
Q  235 ccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38003669 ccctgtcttcatcttcttctcataataaagacgagggtattttt 38003626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 44664716 - 44664763
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  44664716 ttacccctgtcttcatcttcttctcataataaagacgaggatattttt 44664763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 25124781 - 25124734
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  25124781 ttacccctgtcttcatcttcttctcaaaataaagacgagagtattttt 25124734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 41353792 - 41353749
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtat 274  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  41353792 ttacccctgtcttcatcttcttcacataataaagacgagggtat 41353749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 7983646 - 7983599
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||| ||||||||||||  || ||||||||    
T  7983646 ttacccctgtcttcatcttcttttcataataaagattagtgtattttt 7983599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 32068314 - 32068267
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32068314 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 32068267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 42618129 - 42618082
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42618129 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 42618082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 43266474 - 43266521
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43266474 ttacccctgtcttcatcttcttctcataataaagacgagagtattttt 43266521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 10600167 - 10600126
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10600167 ttacccctgtcttcatcttcttctcataataaagacgagggt 10600126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 22081767 - 22081814
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaaga-cgagggtatttt 277  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22081767 ttacccctgtcttcatcttcttctcataataaagancgagggtatttt 22081814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 23058647 - 23058600
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  23058647 ttacccctgtcttcatcttcttctcataataaagatgagtgtattttt 23058600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 25628686 - 25628733
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  25628686 ttacccctatcttcatcttcttctcataataaagacgagggtagtttt 25628733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 32934566 - 32934519
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  32934566 ttacccctatcttcatcttcttctcataataaagtcgagggtattttt 32934519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 25453346 - 25453299
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||| |||||| || |||||||||    
T  25453346 ttacccctgtcttcatcttcttctcatactaaagatgacggtattttt 25453299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 8105665 - 8105703
Alignment:
Q  194 ttccttccacatgcttaatgagcttatgatcacatcatt 232  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  8105665 ttccttccacatgcttaatgaacttatgatcacatcatt 8105703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 17544266 - 17544219
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17544266 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 17544219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 33871557 - 33871510
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33871557 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 33871510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 20153136 - 20153089
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  20153136 ttacccctatcttcatcttcttctcataataaagacgagggtattttt 20153089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 22298760 - 22298713
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  22298760 ttacccgtgtcttcatcttcttctcataataaagacgagggtattttt 22298713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 20152990 - 20152951
Alignment:
Q  239 gtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20152990 gtcttcatcttcttctcataataaagacgagggtattttt 20152951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 3469408 - 3469455
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3469408 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 3469455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 11910907 - 11910954
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11910907 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 11910954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 10294768 - 10294815
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10294768 ttacccctgtcttcatcttcttctcatgataaagacgagggtattttt 10294815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 10307583 - 10307630
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10307583 ttacccctgtcttcatcttcttctcatgataaagacgagggtattttt 10307630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 29686153 - 29686196
Alignment:
Q  235 ccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29686153 ccctgtcttcatcttcttctcataataaagacgagggtattttt 29686196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 41422190 - 41422143
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41422190 ttacccctgtcttcatcttcttctcataataaaaacgagggtattttt 41422143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 52032346 - 52032394
Alignment:
Q  231 ttacccctg-tcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52032346 ttacccctggtcttcatcttcttctcataataaagacgagggtattttt 52032394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 13948998 - 13948951
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  13948998 ttacccttgtcttcatcttcttctcataataaagatgagggtattttt 13948951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 29118756 - 29118709
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  29118756 ttacccccgtcttaatcttcttctcataataaagacgagggtattttt 29118709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 40788638 - 40788591
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  40788638 ttaccccagtcttcatcttcttctcataataaagatgagggtattttt 40788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 43998363 - 43998316
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  43998363 ttacccatgtcttcatcttcttctcataataaagacgaggatattttt 43998316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 3596327 - 3596280
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||    
T  3596327 ttacccctgtcttcatcttagtctcataataaagacgaaggtattttt 3596280  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 32306632 - 32306679
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||    
T  32306632 ttaccgctgtcttcatcttcttttcataataaagacaagggtattttt 32306679  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 16346077 - 16346125
Alignment:
Q  184 ttttatagaattccttccacatgcttaatgagcttatgatcacatcatt 232  Q
    ||||||||  ||||||||||||||||||||| ||| ||||| |||||||    
T  16346077 ttttataggtttccttccacatgcttaatgaacttttgatctcatcatt 16346125  T

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Target: scaffold0042 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 11998 - 11951
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  11998 ttacccctgtcttcatcttcttctcataataaagactagggtattttt 11951  T

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Target: scaffold0006 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 222001 - 222044
Alignment:
Q  235 ccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  222001 ccctgtcttcatcttcttctcataataaagacgagggtattttt 222044  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 7161012 - 7161059
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  7161012 ttacccctgtcttcatcttcttctcataataaagacgatggtattttt 7161059  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 7905461 - 7905414
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7905461 ttacccctgtcttcatattcttctcataataaagacgagggtattttt 7905414  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 10781366 - 10781413
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  10781366 ttacccctgtcttcatcttcttctcataataaagacgaggatattttt 10781413  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 15913766 - 15913719
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  15913766 ttacccctgtcttcatcttcttcttataataaagacgagggtattttt 15913719  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 22502992 - 22502945
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22502992 ttacccctgtcttcatcttcttctcataataaagaagagggtattttt 22502945  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 31407092 - 31407049
Alignment:
Q  235 ccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31407092 ccctgtcttcatcttcttctcataataaagacgagggtattttt 31407049  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 6517720 - 6517673
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  6517720 ttacccctgtcttcatcttcatctcataataaagacgaggctattttt 6517673  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 21836238 - 21836285
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  21836238 ttacccctgtcttcatctttttctcataataaagacgaggatattttt 21836285  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 12065428 - 12065467
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagg 270  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  12065428 ttacccttgtcttcatcttcttctcataataaagacgagg 12065467  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 8710686 - 8710639
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8710686 ttacccctgtcttcatcttcttctcataataaagatgagggtattttt 8710639  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 8342405 - 8342358
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  8342405 ttacccctgtcttcttcttcttatcataataaagacgagggtattttt 8342358  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 15604557 - 15604510
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  15604557 ttacccctgccttcatcttcttctcataataaagatgagggtattttt 15604510  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 6050980 - 6051016
Alignment:
Q  194 ttccttccacatgcttaatgagcttatgatcacatca 230  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  6050980 ttccttccacatgcttaatgagcttttgatctcatca 6051016  T

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Target: scaffold0771 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 1138 - 1091
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  1138 ttacccttgtcttcatcttcttctcataataaagatgagggtattttt 1091  T

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Target: scaffold0388 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 12457 - 12410
Alignment:
Q  231 ttacccctgtcttcatcttcttctcataataaagacgagggtattttt 278  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||||    
T  12457 ttacccatgtcttcatcctcttctcataataaagacgaggatattttt 12410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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