View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_high_17 (Length: 236)

Name: NF17934_high_17
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_high_17
NF17934_high_17
[»] chr2 (14 HSPs)
chr2 (1-36)||(9058476-9058511)
chr2 (1-34)||(30915461-30915494)
chr2 (1-34)||(33436169-33436202)
chr2 (1-34)||(38882882-38882915)
chr2 (4-36)||(10249454-10249486)
chr2 (1-32)||(28381724-28381755)
chr2 (1-32)||(40701478-40701509)
chr2 (4-33)||(32505720-32505749)
chr2 (4-32)||(4060685-4060713)
chr2 (1-33)||(5574557-5574589)
chr2 (1-33)||(7465804-7465836)
chr2 (4-32)||(13438343-13438371)
chr2 (1-29)||(19930889-19930917)
chr2 (1-29)||(28863458-28863486)
[»] chr7 (11 HSPs)
chr7 (1-35)||(7389386-7389420)
chr7 (1-34)||(8080452-8080485)
chr7 (1-34)||(11044186-11044219)
chr7 (1-34)||(38837215-38837248)
chr7 (1-33)||(36361982-36362014)
chr7 (3-34)||(10343634-10343665)
chr7 (3-38)||(36208167-36208202)
chr7 (3-33)||(36362025-36362055)
chr7 (1-34)||(40957705-40957738)
chr7 (1-33)||(3434561-3434593)
chr7 (1-29)||(3783998-3784026)
[»] chr3 (6 HSPs)
chr3 (1-35)||(11095422-11095456)
chr3 (114-156)||(31697746-31697788)
chr3 (1-35)||(54868964-54868998)
chr3 (1-34)||(49607412-49607445)
chr3 (1-32)||(53982011-53982042)
chr3 (1-33)||(17470404-17470436)
[»] chr6 (4 HSPs)
chr6 (1-34)||(6209534-6209567)
chr6 (1-32)||(17598554-17598585)
chr6 (1-33)||(22422087-22422119)
chr6 (1-29)||(22880727-22880755)
[»] chr4 (10 HSPs)
chr4 (1-34)||(29239884-29239917)
chr4 (1-34)||(42044436-42044469)
chr4 (1-32)||(6034044-6034075)
chr4 (1-32)||(11511531-11511562)
chr4 (1-32)||(41236347-41236378)
chr4 (1-36)||(48183118-48183153)
chr4 (4-34)||(480519-480549)
chr4 (1-34)||(50052497-50052530)
chr4 (1-33)||(29234314-29234346)
chr4 (4-32)||(54473605-54473633)
[»] chr1 (6 HSPs)
chr1 (1-34)||(2581913-2581946)
chr1 (1-34)||(38632390-38632423)
chr1 (1-32)||(9474945-9474976)
chr1 (1-32)||(48716351-48716382)
chr1 (3-32)||(47452391-47452420)
chr1 (1-33)||(50630457-50630489)
[»] chr8 (8 HSPs)
chr8 (1-32)||(504190-504221)
chr8 (1-36)||(14547918-14547953)
chr8 (1-35)||(4854932-4854966)
chr8 (1-31)||(9122196-9122226)
chr8 (3-33)||(44507158-44507188)
chr8 (3-32)||(1180011-1180040)
chr8 (3-32)||(34012367-34012396)
chr8 (4-32)||(12831047-12831075)
[»] chr5 (8 HSPs)
chr5 (1-32)||(35785199-35785230)
chr5 (1-32)||(40145407-40145438)
chr5 (1-31)||(36875672-36875702)
chr5 (1-34)||(13811650-13811683)
chr5 (1-34)||(18520953-18520986)
chr5 (3-32)||(33149709-33149738)
chr5 (5-34)||(36733015-36733044)
chr5 (1-33)||(2740273-2740305)


Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9058511 - 9058476
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactcttat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9058511 tgccacctaagggtgtctatgtatcattactcttat 9058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30915494 - 30915461
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30915494 tgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33436169 - 33436202
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33436169 tgccacctaagggtgtctatgtatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38882882 - 38882915
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38882882 tgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 10249454 - 10249486
Alignment:
Q  4 cacctaagggtgtctatgtatcattactcttat 36  Q
    |||||||||||||||||||||||||||||||||    
T  10249454 cacctaagggtgtctatgtatcattactcttat 10249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 28381724 - 28381755
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  28381724 tgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40701509 - 40701478
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40701509 tgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 32505720 - 32505749
Alignment:
Q  4 cacctaagggtgtctatgtatcattactct 33  Q
    ||||||||||||||||||||||||||||||    
T  32505720 cacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 4060713 - 4060685
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  4060713 cacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5574557 - 5574589
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    ||||||||||| |||||||||||||||||||||    
T  5574557 tgccacctaagagtgtctatgtatcattactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7465804 - 7465836
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  7465804 tgccatctaagggtgtctatgtatcattactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 13438371 - 13438343
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  13438371 cacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19930889 - 19930917
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  19930889 tgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28863486 - 28863458
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  28863486 tgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7389420 - 7389386
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  7389420 tgccacctaagggtgtctatgtatcattactctta 7389386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8080452 - 8080485
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8080452 tgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11044219 - 11044186
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  11044219 tgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38837248 - 38837215
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38837248 tgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36361982 - 36362014
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||||||||||||||||||||||    
T  36361982 tgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 10343634 - 10343665
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||    
T  10343634 ccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 36208202 - 36208167
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactcttatgc 38  Q
    ||||||||||||||||||||||||| ||||||||||    
T  36208202 ccacctaagggtgtctatgtatcataactcttatgc 36208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 36362055 - 36362025
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||||||||||||||||||||    
T  36362055 ccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40957738 - 40957705
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  40957738 tgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3434593 - 3434561
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  3434593 tgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3784026 - 3783998
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  3784026 tgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11095422 - 11095456
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11095422 tgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 31697788 - 31697746
Alignment:
Q  114 ttaccctcgctcatagcgttttgttttcagagttgattttctt 156  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  31697788 ttacactcgctcatagcgttttgttctcagagttgattttctt 31697746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 54868964 - 54868998
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  54868964 tgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 49607445 - 49607412
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  49607445 tgccacctaagggtgtctatgtatcattactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 53982042 - 53982011
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  53982042 tgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17470436 - 17470404
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||| ||||||||||||||||||||||    
T  17470436 tgccacctaaaggtgtctatgtatcattactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6209534 - 6209567
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6209534 tgccacctaagggtgtctatgtatcattactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 17598585 - 17598554
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  17598585 tgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22422087 - 22422119
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  22422087 tgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22880727 - 22880755
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  22880727 tgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29239917 - 29239884
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29239917 tgccacctaagggtgtctatgtatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42044436 - 42044469
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42044436 tgccacctaagggtgtctatgtatcattactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6034075 - 6034044
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  6034075 tgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11511531 - 11511562
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  11511531 tgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41236378 - 41236347
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  41236378 tgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48183118 - 48183153
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactcttat 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  48183118 tgccacgtaagggtgtctatgtatcattactcttat 48183153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 480519 - 480549
Alignment:
Q  4 cacctaagggtgtctatgtatcattactctt 34  Q
    |||||||||||||||||||||||||||||||    
T  480519 cacctaagggtgtctatgtatcattactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50052497 - 50052530
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    |||||||||||| |||||||||||||||||||||    
T  50052497 tgccacctaaggatgtctatgtatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29234314 - 29234346
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  29234314 tgccatctaagggtgtctatgtatcattactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 54473605 - 54473633
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  54473605 cacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2581946 - 2581913
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2581946 tgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38632390 - 38632423
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38632390 tgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9474945 - 9474976
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  9474945 tgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48716351 - 48716382
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  48716351 tgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 47452391 - 47452420
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  47452391 ccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50630489 - 50630457
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||| ||||||||||||||||||    
T  50630489 tgccacctaagggtatctatgtatcattactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 504190 - 504221
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  504190 tgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14547953 - 14547918
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactcttat 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14547953 tgccacctaagggtgtctatgtatctttactcttat 14547918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4854932 - 4854966
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  4854932 tgccacctaaggatgtctatgtatcattactctta 4854966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9122226 - 9122196
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattact 31  Q
    |||||||||||||||||||||||||||||||    
T  9122226 tgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 44507158 - 44507188
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||||||||||||||||||||    
T  44507158 ccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 1180011 - 1180040
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  1180011 ccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 34012367 - 34012396
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  34012367 ccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 12831075 - 12831047
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  12831075 cacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35785230 - 35785199
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  35785230 tgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40145438 - 40145407
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40145438 tgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36875672 - 36875702
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattact 31  Q
    |||||||||||||||||||||||||||||||    
T  36875672 tgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13811683 - 13811650
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  13811683 tgccacctaagggtgtctatgtatctttactctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18520953 - 18520986
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  18520953 tgccacctaagggtgtctatgtatcattattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 33149709 - 33149738
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  33149709 ccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 36733015 - 36733044
Alignment:
Q  5 acctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||    
T  36733015 acctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2740305 - 2740273
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  2740305 tgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University