View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17934_high_18 (Length: 229)
Name: NF17934_high_18
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 4932861 - 4933057
Alignment:
| Q |
18 |
aaacatagggtacccttccttaccaaaaaaggattcttcccattcttacattctttgttttggaaatgagaatccagaatcaatgttgaacattggttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4932861 |
aaacatagggtacccttccttaccaaaaaaggattcttcccattcttacattctttgttttggaaatgagaatccagaatcaatgttgaacattggttca |
4932960 |
T |
|
| Q |
118 |
actttaaaaccaaaaggcaaggtttctaatcatgggaaatctttaacctcaaaagggtccttagaaaaccaaaaaaggggaccaaaacgcaatattc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4932961 |
actttaaaaccaaaaggcaaggtttctaatcatgggaaatctttagcctcaaaagggtccttagaaaaccaaaaaaagggaccaaaacgcaatattc |
4933057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University