View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_high_3 (Length: 603)

Name: NF17934_high_3
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_high_3
NF17934_high_3
[»] chr7 (13 HSPs)
chr7 (19-597)||(27282341-27282904)
chr7 (173-302)||(27272776-27272906)
chr7 (19-101)||(27296767-27296849)
chr7 (87-166)||(27249804-27249883)
chr7 (69-168)||(27272653-27272744)
chr7 (213-279)||(27244457-27244525)
chr7 (19-79)||(27272269-27272328)
chr7 (84-159)||(27243869-27243943)
chr7 (213-276)||(27251216-27251281)
chr7 (493-565)||(27296859-27296933)
chr7 (479-565)||(27266979-27267070)
chr7 (174-218)||(27244383-27244427)
chr7 (517-565)||(27245138-27245186)
[»] chr1 (3 HSPs)
chr1 (60-167)||(14883514-14883621)
chr1 (127-168)||(14889156-14889197)
chr1 (174-218)||(14889047-14889091)


Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 597
Target Start/End: Original strand, 27282341 - 27282904
Alignment:
Q  19 ttaatttctccgtttgtaagttgtaaccgaaatatataattaaataaactctgaaatatttcaattcaaaataatcaatatctgatgcacatttggattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282341 ttaatttctccgtttgtaagttgtaaccgaaatatataattaaataaactctgaaatatttcaattcaaaataatcaatatctgatgcacatttggattt 27282440  T
Q  119 accatcatctctcttaattcttacattgaattgaattagttacattttacttaattgcacgaagttaattctattgagagcaatatttaatagaatataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27282441 accatcatctctcttaattcttacattgaattgaattagttacattttacgtaattgcacgaagttaattctattgagagcaatttttaatagaatataa 27282540  T
Q  219 aatagtgacaaaataaaagattaacgatcttaatcggataatctagagggaagaagatcaaaagggggtgggtaacattataattttaccttgtttgggt 318  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  27282541 aatagtgacaaaataaaagattaacaatcttaatcggataatctagagggaagaagatcaaaagggggtgggttacattataattgtaccttgtttgggt 27282640  T
Q  319 ttctctaacattttcattattccgttgtgagtctttttccattattctagtctttttctttgaaacgtgtacttgtgaaccatcatcctttttcattgtt 418  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282641 ttctctaacattttcattattcctttgagagtcttttcccattattctagtctttttctttgaaacgtgtacttgtgaaccatcatcctttttcattgtt 27282740  T
Q  419 acataacctacaattaacctaaaataaagaaggggttnnnnnnnggggggttcaaaaacaagttaaagaaggggtattaattttgcaaacgatcctatga 518  Q
    |||||||||||||||||||||||||||||||               ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282741 acataacctacaattaacctaaaataaagaa---------------gggattcaaaaacaagttaaagaaggggtattaattttgcaaacgatcctatga 27282825  T
Q  519 gataggaaaagttaaaaatgacgagattttcaacaacgtagtagtttgtgtaagattttaaccatatggcaacaccttt 597  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  27282826 gataggaaaagttaaaaatgacgagattttcaacaacgtcgtagtttgtgtaagattttaaccatatgacaacaccttt 27282904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 173 - 302
Target Start/End: Original strand, 27272776 - 27272906
Alignment:
Q  173 ttgcacgaagttaattctattgagagcaatatttaatagaatataaaatagtgacaaaataaaagattaacgatcttaatcggataatctagagggaaga 272  Q
    |||||| |||||||||||||| |||  ||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||| |||||| |||||||    
T  27272776 ttgcaccaagttaattctatttagaataatatttaatagattataaaatagtgacaaattaagagattaacaatcttaatcggattatctagtgggaaga 27272875  T
Q  273 agatcaaaagggggt-gggtaacattataat 302  Q
    ||||||||||||||| |||| ||||||||||    
T  27272876 agatcaaaagggggtcgggttacattataat 27272906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 27296767 - 27296849
Alignment:
Q  19 ttaatttctccgtttgtaagttgtaaccgaaatatataattaaataaactctgaaatatttcaattcaaaataatcaatatct 101  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  27296767 ttaatttctccgattgtaagttgtaaccgaaatatataattaaataaaatctgaaatatttcaattcaaaatgatcaatatct 27296849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 27249804 - 27249883
Alignment:
Q  87 aaataatcaatatctgatgcacatttggatttaccatcatctctcttaattcttacattgaattgaattagttacatttt 166  Q
    ||||| ||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  27249804 aaatattcaatatatgatggacattttgatttacaatcatctctcttaattcttacattgaattgaattagtaacatttt 27249883  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 27272653 - 27272744
Alignment:
Q  69 ctgaaatatttcaattcaaaataatcaatatctgatgcacatttggatttaccatcatctctcttaattcttacattgaattgaattagttacattttac 168  Q
    |||||||||||||||||||||||||||        || ||||| |||| |||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  27272653 ctgaaatatttcaattcaaaataatca--------tggacattaggatgtactgtcatctctcataattcttacattgaattgaattagttacattttac 27272744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 27244457 - 27244525
Alignment:
Q  213 atataaaatagtgacaaaataaaagattaa-cgatctt-aatcggataatctagagggaagaagatcaa 279  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||    
T  27244457 atataaaatagtgacaaaatataagattaaacgatctttaatcggattatctagagggaagaagatcaa 27244525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27272269 - 27272328
Alignment:
Q  19 ttaatttctccgtttgtaagttgtaaccgaaatatataattaaataaactctgaaatattt 79  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||    
T  27272269 ttaatttctccgattgtaagtcg-aaccgaaatatataattaaataaaatctgaaatattt 27272328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 27243869 - 27243943
Alignment:
Q  84 tcaaaataatcaatatctgatgcacatttggatttaccatcatctctcttaattcttacattgaattgaattagtt 159  Q
    |||||||| |||||||  |||| ||||||||||||| |  |||||||||||||||||||||| ||||| |||||||    
T  27243869 tcaaaatattcaatata-gatggacatttggatttagcgccatctctcttaattcttacatttaattgtattagtt 27243943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 27251216 - 27251281
Alignment:
Q  213 atataaaatagtgac--aaaataaaagattaacgatcttaatcggataatctagagggaagaagat 276  Q
    ||||||||||| |||  |||| ||||||||||| |||||||||||||  |||||||||||||||||    
T  27251216 atataaaatagcgaccaaaaaaaaaagattaacaatcttaatcggattgtctagagggaagaagat 27251281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 27296859 - 27296933
Alignment:
Q  493 tattaattttgcaaacgatcctatgagata--ggaaaagttaaaaatgacgagattttcaacaacgtagtagttt 565  Q
    ||||||||| |||||| ||||||||||| |  |||||||||  ||||||| ||||||| || |||||||||||||    
T  27296859 tattaatttggcaaacaatcctatgagagaatggaaaagttcgaaatgacaagattttaaaaaacgtagtagttt 27296933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 565
Target Start/End: Original strand, 27266979 - 27267070
Alignment:
Q  479 agttaaagaaggggt---attaattttgcaaacgatcctatgagatag--gaaaagttaaaaatgacgagattttcaacaacgtagtagttt 565  Q
    |||||||||||||||   |||||||| |||||| ||| || |||| |   ||||||||| ||||||| ||||||| ||||||||||||||||    
T  27266979 agttaaagaaggggtgatattaatttggcaaacaatcttacgagagacatgaaaagttagaaatgacaagattttgaacaacgtagtagttt 27267070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 27244383 - 27244427
Alignment:
Q  174 tgcacgaagttaattctattgagagcaatatttaatagaatataa 218  Q
    ||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  27244383 tgcacgaagttaattatattgagagtaatatctaatagattataa 27244427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 565
Target Start/End: Original strand, 27245138 - 27245186
Alignment:
Q  517 gagataggaaaagttaaaaatgacgagattttcaacaacgtagtagttt 565  Q
    |||||| | ||||||| ||||||| ||||||| ||||||||||||||||    
T  27245138 gagatatggaaagttagaaatgacaagattttgaacaacgtagtagttt 27245186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 14883621 - 14883514
Alignment:
Q  60 aaataaactctgaaatatttcaattcaaaataatcaatatctgatgcacatttggatttaccatcatctctcttaattcttacattgaattgaattagtt 159  Q
    ||||||| | |||||| |||||  |||||||| | ||||| ||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  14883621 aaataaaatttgaaatgtttcagatcaaaatattaaatatatgatggacatttggatttactgccatctctcttaattcttacattgaattgaattagtt 14883522  T
Q  160 acatttta 167  Q
     |||||||    
T  14883521 tcatttta 14883514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 14889197 - 14889156
Alignment:
Q  127 ctctcttaattcttacattgaattgaattagttacattttac 168  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  14889197 ctctattaattcttacattgaattgaactagttacattttac 14889156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 14889091 - 14889047
Alignment:
Q  174 tgcacgaagttaattctattgagagcaatatttaatagaatataa 218  Q
    ||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  14889091 tgcacgaagttaattatattgagagtaatatctaatagattataa 14889047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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