View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_high_7 (Length: 352)
Name: NF17934_high_7
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 31405069 - 31405343
Alignment:
| Q |
13 |
aatattcacagtaaattttaaaatacttaaaagttatttcaagacttttatttttcgactgaaattattcaagatttaaaaaaagatagttaatcttgaa |
112 |
Q |
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| T |
31405069 |
aatattcacagtaaattttaaaatacttaaaagttatttcaagacttttatttttcaacggaaattattcaagatttaaaaaaagatagttaatcttgaa |
31405168 |
T |
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| Q |
113 |
tnnnnnnnnnnnnnnnnnngatagttaatatatatacacttcgtttgttaaaattgttttgtattgttaacccatcatcgttaaacttatattttatacg |
212 |
Q |
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| T |
31405169 |
taaaaaaaa----------gatagttaatatatatacacttcatttgttaaaattgttttgtattgtcaacccatcatcgttaaacttatattttatacg |
31405258 |
T |
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| Q |
213 |
tgattcattgaaattgatttcttattttaatatgttcgtaattgccttaacaatccttggacagtaattgccttaacaatccttg |
297 |
Q |
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| T |
31405259 |
tgattcattgaaattgatttcttattttaatatgttcgtaattgccttaacaatccttggacagtaattgccttaacaatccttg |
31405343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 31370292 - 31370324
Alignment:
| Q |
306 |
ttcaaatctaacatttatatcaaaagcagttac |
338 |
Q |
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| T |
31370292 |
ttcaaatctaacatttatatcaaaagcagttac |
31370324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 31405425 - 31405457
Alignment:
| Q |
306 |
ttcaaatctaacatttatatcaaaagcagttac |
338 |
Q |
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| T |
31405425 |
ttcaaatctaacatttatatcaaaagcagttac |
31405457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 31384577 - 31384624
Alignment:
| Q |
13 |
aatattcacagtaaatttt-aaaatacttaaaagttatttcaagacttt |
60 |
Q |
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| T |
31384577 |
aatattcaca-taaattttcaaaatacttaaaagttatttcaatacttt |
31384624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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