View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17934_low_1 (Length: 824)
Name: NF17934_low_1
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 783
Target Start/End: Original strand, 32590553 - 32591342
Alignment:
| Q |
1 |
taaaatttggacagtttaatactccatcggtaattaaatatgtggagagnnnnnnnnnnnngttcaatgtttctagtccaaaatttggacaaaaacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32590553 |
taaaatttggacagtttaatactccatcggtaattaaatatgtggagagaaaaataaaaaagttcaatgtttctagtccaaaatctggacaaaaacattt |
32590652 |
T |
|
| Q |
101 |
gactttttgaatctttttaatttgtattttgttgcttaaggagttgtgttaccttacttttt--gacagatatattaaatgagaattttgtgataatcta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
32590653 |
gactttttgaatctttttaatttgtattttgttgcttaaggagttgtgttaccttacttttttcgacaaatatattaaatgagaatttttagataatcta |
32590752 |
T |
|
| Q |
199 |
gaatttgggatgtcgatgacatgtagaccaaattaattgctcttatccctt----aattgttcattcccatccaaaattctaaaattaacctcaataaca |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
32590753 |
gaatttgggatgtcgatgacatgtagaccaaattaattgctcttgtccctttgaaaattgttcattcccatccaaaattttaaaattaacctcaacaaca |
32590852 |
T |
|
| Q |
295 |
gttaactgtcattcgatatcaacgatagttaattgtttccttctaatagcagatatgtttccctcgaaaatgagtgatcaaagaagaagaataactcaat |
394 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
32590853 |
gttaactgtcattcgatatcaacagtagttaattgtttccttctaatagcagatatgtttccctcgagaatcagtgatcaaagaagaagaataactcaat |
32590952 |
T |
|
| Q |
395 |
gaagcttcaatgccaaaatacccatctttaaaattctttgacttctttctctccaaagtaggagttttcattatgtcttttggtattgcaagctttttac |
494 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
32590953 |
gaagcttcaataccaaaatacccatctttaaaattctttgacttctttctctccaaagtaggagttttcattatgtcttttggtattgcaatcttttcac |
32591052 |
T |
|
| Q |
495 |
atcttaaattaagtctattattatcatttcctctctgtatagctaatgggctagtaggtgacctgggttttggagaaattggtggtgtcaatgaagtaat |
594 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32591053 |
atcttaaattaagtccattattatcatttcctctctttatagctaatggtctagtaggtgacctgggttttggagaaattggtggtgtcaatgaagtaat |
32591152 |
T |
|
| Q |
595 |
agtcttgtttggaagtggtagtggagaaagtgatttcggtgttgatttcttaattgagtttcttctttcaagatttg-aacatggttgcatgttggttga |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32591153 |
agtcttgtttggaagtggtagtggagaaagtgatttcggtgttgatttcttaattgagtttcttctttcaagatttgaaacatggttgcatgttggttga |
32591252 |
T |
|
| Q |
694 |
agtactggccttccattgattctagcaacatgaggtgttgtggaagattcctgtattaagcacaaaagtatgccttgtttaataaattgg |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32591253 |
agtactggccttccattgattctagcaacatgaggtgttgtggaagattcctgtattaagcacaaaactatgccttgtttaataaattgg |
32591342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 32594844 - 32594878
Alignment:
| Q |
166 |
agatatattaaatgagaattttgtgataatctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
32594844 |
agatatattaaatgagaattttgtgatactctaga |
32594878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 367 - 743
Target Start/End: Original strand, 26804400 - 26804789
Alignment:
| Q |
367 |
agtgatcaaagaagaagaataactcaatgaagc---ttcaatgccaaaatacccatctttaaaattctttgacttctttctctccaaagtaggagttttc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||| ||||||| || || ||||||||||| ||||||||| |
|
|
| T |
26804400 |
agtgatcaaagaagaagaataactcaatgaagcagcttcaataccaaaagacccttctttaaaactctttgattttttcctctccaaagttggagttttc |
26804499 |
T |
|
| Q |
464 |
attatgtcttttggtattgcaagctttttacatcttaaattaagtctattattatcatttcctctctgtatagctaatgggctagta------ggtgacc |
557 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||| ||||||||||||| |||||| ||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
26804500 |
attatgttttttggtattgaaatcttttcacagcttaaattaagtccattattgtcatttcctctctttatagctaatggtctagtactagtaggtgact |
26804599 |
T |
|
| Q |
558 |
tgggttttggagaaattggtggtgtcaatgaag---taatagtcttgtttggaagtggtagtggagaaagtgatttcggtgttgatttcttaattgagtt |
654 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26804600 |
ttggttttggagaaattggtggtgtcaatgaagaagtattagtcttgtttggaagtggtaatggagaaagtgattttggtgttgatttcttaattgagtt |
26804699 |
T |
|
| Q |
655 |
tcttctttcaagattt-gaacatggttgcatgttggttgaagtactggccttccattgattctagcaacatgaggtgttgtggaagattc |
743 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26804700 |
tcttctttcaagatttggaacatggttgcatgttggttgaagtactggccttccattgattctagcaacatgtggtgttgtggaagattc |
26804789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 723
Target Start/End: Original strand, 18418217 - 18418321
Alignment:
| Q |
620 |
gaaagtgatttcggtgttgatttcttaattgagtttcttctttcaagattt-gaacatggttgcatgttggttgaagtactggccttccattgattctag |
718 |
Q |
| |
|
||||||||||| |||| | ||||||| ||||| |||||||||||||||||| | || ||| || ||||||||||| || || |||||||||||| | | |
|
|
| T |
18418217 |
gaaagtgattttggtggtaatttcttgattgaatttcttctttcaagatttggcactctgttacaagttggttgaagaacaggtcttccattgattttgg |
18418316 |
T |
|
| Q |
719 |
caaca |
723 |
Q |
| |
|
||||| |
|
|
| T |
18418317 |
caaca |
18418321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University