View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_low_11 (Length: 325)

Name: NF17934_low_11
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_low_11
NF17934_low_11
[»] chr6 (13 HSPs)
chr6 (1-312)||(5433077-5433387)
chr6 (1-56)||(5433415-5433471)
chr6 (5-54)||(3418844-3418894)
chr6 (1-61)||(667723-667784)
chr6 (1-34)||(3418779-3418812)
chr6 (1-61)||(7498426-7498487)
chr6 (1-62)||(2033163-2033225)
chr6 (1-56)||(3343777-3343833)
chr6 (1-56)||(4156423-4156479)
chr6 (1-56)||(10731557-10731613)
chr6 (1-56)||(11989226-11989282)
chr6 (1-56)||(19687551-19687607)
chr6 (1-56)||(32786200-32786256)
[»] chr7 (26 HSPs)
chr7 (1-61)||(1742249-1742309)
chr7 (1-56)||(11032387-11032443)
chr7 (1-61)||(11677023-11677084)
chr7 (1-61)||(35160833-35160894)
chr7 (1-56)||(37066266-37066322)
chr7 (1-44)||(40116152-40116196)
chr7 (1-56)||(46578349-46578405)
chr7 (1-56)||(6580589-6580644)
chr7 (1-55)||(11676905-11676960)
chr7 (1-56)||(1741880-1741936)
chr7 (1-62)||(30005960-30006022)
chr7 (1-62)||(35160743-35160805)
chr7 (1-54)||(46658734-46658788)
chr7 (3-51)||(11676971-11677020)
chr7 (2-62)||(14206415-14206476)
chr7 (2-62)||(14215105-14215166)
chr7 (1-53)||(20353060-20353113)
chr7 (1-61)||(26153999-26154060)
chr7 (1-57)||(45833189-45833246)
chr7 (1-56)||(3498294-3498350)
chr7 (1-56)||(6580505-6580561)
chr7 (1-44)||(27234870-27234914)
chr7 (1-56)||(28003178-28003234)
chr7 (1-56)||(28003262-28003318)
chr7 (3-62)||(30005870-30005930)
chr7 (1-56)||(46658816-46658872)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-54)||(58384-58438)
[»] chr8 (15 HSPs)
chr8 (1-56)||(44282265-44282321)
chr8 (1-61)||(43484016-43484077)
chr8 (1-53)||(9303307-9303360)
chr8 (1-50)||(899252-899302)
chr8 (1-62)||(9203468-9203530)
chr8 (1-41)||(1875703-1875744)
chr8 (1-34)||(8568904-8568937)
chr8 (1-41)||(39655432-39655473)
chr8 (1-62)||(3105867-3105930)
chr8 (1-56)||(17116477-17116533)
chr8 (1-56)||(18126055-18126111)
chr8 (1-56)||(32480280-32480336)
chr8 (1-56)||(34194644-34194700)
chr8 (1-56)||(35063461-35063516)
chr8 (1-56)||(37922896-37922952)
[»] chr4 (34 HSPs)
chr4 (2-53)||(34459070-34459122)
chr4 (1-62)||(34595766-34595828)
chr4 (1-49)||(15185909-15185958)
chr4 (1-45)||(50519346-50519391)
chr4 (1-61)||(51126100-51126161)
chr4 (1-56)||(18592345-18592401)
chr4 (1-56)||(24156139-24156195)
chr4 (1-56)||(34166112-34166168)
chr4 (1-63)||(8014176-8014239)
chr4 (1-55)||(48088011-48088066)
chr4 (1-62)||(25856094-25856156)
chr4 (2-56)||(40545381-40545435)
chr4 (1-62)||(51975208-51975270)
chr4 (1-50)||(55131542-55131592)
chr4 (1-34)||(1945447-1945480)
chr4 (1-55)||(3517063-3517119)
chr4 (1-61)||(16200162-16200223)
chr4 (1-34)||(23511885-23511918)
chr4 (1-34)||(23511960-23511993)
chr4 (1-34)||(24529596-24529629)
chr4 (1-53)||(30051346-30051399)
chr4 (1-34)||(34595713-34595746)
chr4 (1-61)||(34709659-34709720)
chr4 (1-56)||(9968301-9968357)
chr4 (2-34)||(23511921-23511953)
chr4 (1-56)||(23710835-23710891)
chr4 (1-33)||(34166184-34166216)
chr4 (9-56)||(44495690-44495738)
chr4 (1-56)||(44551282-44551338)
chr4 (1-56)||(48079600-48079656)
chr4 (5-56)||(48088083-48088135)
chr4 (1-52)||(53402995-53403047)
chr4 (4-55)||(55501289-55501341)
chr4 (1-56)||(56420515-56420571)
[»] chr3 (25 HSPs)
chr3 (1-56)||(9447902-9447957)
chr3 (1-53)||(20821444-20821497)
chr3 (1-61)||(25995626-25995687)
chr3 (1-56)||(17004958-17005014)
chr3 (2-53)||(51486429-51486481)
chr3 (1-56)||(54008291-54008347)
chr3 (5-56)||(48126723-48126774)
chr3 (1-62)||(378772-378834)
chr3 (1-62)||(16127742-16127804)
chr3 (1-62)||(32814712-32814774)
chr3 (1-54)||(34935540-34935594)
chr3 (1-34)||(17005044-17005077)
chr3 (1-61)||(17940183-17940244)
chr3 (1-61)||(34205558-34205619)
chr3 (1-34)||(40326522-40326555)
chr3 (1-61)||(44435258-44435319)
chr3 (1-34)||(44544181-44544214)
chr3 (1-34)||(54985546-54985579)
chr3 (1-56)||(1453386-1453442)
chr3 (1-56)||(22995780-22995836)
chr3 (1-56)||(29726358-29726414)
chr3 (1-56)||(29726450-29726506)
chr3 (1-56)||(29726542-29726598)
chr3 (1-56)||(33638998-33639054)
chr3 (1-56)||(54690438-54690494)
[»] scaffold0047 (2 HSPs)
scaffold0047 (3-56)||(63524-63578)
scaffold0047 (1-56)||(63438-63494)
[»] chr1 (34 HSPs)
chr1 (1-62)||(39015557-39015619)
chr1 (1-53)||(34598946-34598999)
chr1 (1-55)||(35049933-35049988)
chr1 (1-61)||(47991772-47991833)
chr1 (1-56)||(27146108-27146164)
chr1 (1-55)||(2091747-2091802)
chr1 (1-44)||(28237156-28237199)
chr1 (1-62)||(6763418-6763480)
chr1 (2-55)||(12062195-12062249)
chr1 (5-54)||(15013659-15013709)
chr1 (1-62)||(25378341-25378403)
chr1 (1-54)||(38847386-38847440)
chr1 (1-41)||(3160765-3160806)
chr1 (1-61)||(11343747-11343808)
chr1 (1-61)||(11501767-11501828)
chr1 (1-42)||(12447538-12447579)
chr1 (1-41)||(12993635-12993676)
chr1 (2-50)||(21852443-21852492)
chr1 (1-61)||(24023449-24023510)
chr1 (1-34)||(34038004-34038037)
chr1 (1-61)||(34061938-34061999)
chr1 (1-41)||(48605154-48605195)
chr1 (1-45)||(50998315-50998360)
chr1 (1-45)||(50998388-50998433)
chr1 (1-44)||(1252143-1252187)
chr1 (1-44)||(3606273-3606317)
chr1 (1-56)||(5852688-5852744)
chr1 (1-56)||(7230009-7230065)
chr1 (1-52)||(17988226-17988278)
chr1 (1-56)||(37255210-37255266)
chr1 (1-56)||(46518029-46518085)
chr1 (1-56)||(47011328-47011384)
chr1 (1-56)||(47912572-47912628)
chr1 (1-56)||(49363468-49363524)
[»] chr5 (27 HSPs)
chr5 (1-61)||(29112279-29112340)
chr5 (1-56)||(34186439-34186495)
chr5 (1-56)||(35245692-35245748)
chr5 (1-45)||(36137099-36137143)
chr5 (1-54)||(3161310-3161364)
chr5 (1-62)||(13420518-13420580)
chr5 (1-62)||(14064804-14064866)
chr5 (1-62)||(14550116-14550178)
chr5 (1-62)||(33696739-33696801)
chr5 (1-62)||(43585489-43585551)
chr5 (1-61)||(3780975-3781036)
chr5 (5-61)||(6638225-6638282)
chr5 (1-34)||(15966727-15966760)
chr5 (1-61)||(19784607-19784668)
chr5 (1-34)||(24230946-24230979)
chr5 (1-34)||(36964253-36964286)
chr5 (1-53)||(43585579-43585632)
chr5 (2-34)||(4151240-4151272)
chr5 (1-56)||(13359161-13359217)
chr5 (1-56)||(13461550-13461606)
chr5 (1-56)||(13461634-13461690)
chr5 (1-56)||(19784534-19784590)
chr5 (1-56)||(20361977-20362033)
chr5 (1-56)||(26168272-26168328)
chr5 (1-44)||(27990441-27990485)
chr5 (1-56)||(34186355-34186411)
chr5 (1-56)||(38860884-38860940)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-62)||(11668-11730)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-54)||(17518-17572)
[»] chr2 (18 HSPs)
chr2 (1-54)||(2795394-2795448)
chr2 (1-62)||(29573808-29573870)
chr2 (1-62)||(35607409-35607471)
chr2 (1-61)||(4101943-4102004)
chr2 (1-61)||(4898160-4898221)
chr2 (1-61)||(4945554-4945615)
chr2 (1-61)||(26567720-26567781)
chr2 (1-61)||(30202568-30202629)
chr2 (1-61)||(33363643-33363704)
chr2 (1-61)||(37486083-37486144)
chr2 (1-56)||(5094840-5094896)
chr2 (1-62)||(15178008-15178070)
chr2 (1-56)||(19908505-19908561)
chr2 (5-56)||(20556674-20556726)
chr2 (1-56)||(21208976-21209032)
chr2 (1-56)||(26567636-26567692)
chr2 (1-56)||(40340553-40340609)
chr2 (1-56)||(44949342-44949398)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-56)||(22444-22500)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 5433387 - 5433077
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataattgaaaacggagggggtataccaacaatatacattggtgtgtagtattactttcggnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5433387 catcattaattgaatgaacctaaatagtcaatttgcttataattgaaaacggagggggtataccaacaatatacattggtgtgtagtattactttcggaa 5433288  T
Q  101 nnnnnncttcaaaacaaggagacgttttcgtataatattgtcattaaaattatgaaagccatgtctgaaaattttgctgatgtagttcaaagatttaaaa 200  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5433287 aaaaa-cttcaaaacaaggagacgttttcgtataatattgtcattaaaattatgaaagccatgtctgaaaattttgctgatgtagttcaaagatttaaaa 5433189  T
Q  201 tgatactacatcctttcctatttataagctcctttagtatttctcacatatattaagaaacgttaannnnnnnncctttcaaattgtgaggcttataatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||  ||||||||||||||    
T  5433188 tgatactacatcctttcctatttataagctcctttagtatttctcacatatattaagaaacgttaattttttttcctttcaaatgatgaggcttataatt 5433089  T
Q  301 agggacacaggt 312  Q
    ||||||| ||||    
T  5433088 agggacaaaggt 5433077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5433415 - 5433471
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggaggg 56  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||    
T  5433415 catcattaattgaatgaacataaaaagtcaaatttgcttataattaaaaacggaggg 5433471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 3418844 - 3418894
Alignment:
Q  5 attaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggag 54  Q
    |||||||||||||||||||| |||||| |||||||||| || |||||||||    
T  3418844 attaattgaatgaacctaaaaagtcaattttgcttatatttaaaaacggag 3418894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 667784 - 667723
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    |||||||||| ||||||||||||| | |||| |||||||||| || ||||||||||| ||||    
T  667784 catcattaatggaatgaacctaaaaaatcaattttgcttatatttaaaaacggagggagtat 667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3418812 - 3418779
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  3418812 catcattaattgaatgaacctaaaaagtcaattt 3418779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7498487 - 7498426
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||||| ||| |||||| || ||||||||||| ||||    
T  7498487 catcattaaatgaatgaacctaaaaagtcaattttacttatatttaaaaacggagggagtat 7498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2033225 - 2033163
Alignment:
Q  1 catcattaattgaatgaacctaaatagt--caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||   |||||||||||| | |||||||||||| |||||    
T  2033225 catcattaattgaatgaacctaaa-agttaaaatttgcttatattagaaaacggagggagtata 2033163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3343833 - 3343777
Alignment:
Q  1 catcattaattgaatgaacctaaatagtca-atttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| | |||  |||||||||| || |||||||||||    
T  3343833 catcattaattgaatgaacctaaaaaatcatttttgcttatatttaaaaacggaggg 3343777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4156423 - 4156479
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||| ||||||    
T  4156423 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaatggaggg 4156479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10731557 - 10731613
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  10731557 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 10731613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11989226 - 11989282
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  11989226 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 11989282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19687551 - 19687607
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  ||||||| |||| || |||||||||||    
T  19687551 catcattaattgaatgaacctaaaaagtaaaatttgcatatatttaaaaacggaggg 19687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32786200 - 32786256
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  32786200 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 32786256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1742249 - 1742309
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||    
T  1742249 catcattaattgaatgagtctaaaaagtcaatttgcttataattgaaaacggagggagtat 1742309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11032387 - 11032443
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  ||| |||||||||||||||||||||||    
T  11032387 catcattaattgaatgaacctaaaaagtaaaatctgcttataattgaaaacggaggg 11032443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11677023 - 11677084
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| | | || ||||||||||||| ||||||||||| ||||    
T  11677023 catcattaattgaatgaacctaaaaaattaattttgcttataattaaaaacggagggagtat 11677084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35160833 - 35160894
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||| |||||||||||||||| |||||| |||||||||| || ||||||||||| ||||    
T  35160833 catcattcattgaatgaacctaaaaagtcaattttgcttatatttaaaaacggagggagtat 35160894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37066266 - 37066322
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  37066266 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 37066322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40116196 - 40116152
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataatt 44  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  40116196 catcattaattgaatgaacctaaaaagtcgaatttgcttataatt 40116152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46578349 - 46578405
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  46578349 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 46578405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6580589 - 6580644
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||||||| ||||| || |||| ||||||    
T  6580589 catcattaagtgaatgaacctaaaaagtcaatttggttatatttaaaaatggaggg 6580644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11676960 - 11676905
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagg 55  Q
    |||||||||||||||||||||||| | |||| ||||||||||||| ||||| ||||    
T  11676960 catcattaattgaatgaacctaaaaaatcaattttgcttataattaaaaacagagg 11676905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1741936 - 1741880
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc--aatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||| | |||||||||    
T  1741936 catcattaattgaatgaacctaaa-agtcaaaatttgcttataattaacaacggaggg 1741880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30005960 - 30006022
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||  | |||||||| |||||    
T  30005960 catcattaattgaatgaacctaaaaagtcaattttgcttatattttcatacggagggagtata 30006022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35160805 - 35160743
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||  ||||||| || |||||    
T  35160805 catcattaattgaatgaacctaaaaagtcaattttgcttatatttagaaacggatggagtata 35160743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46658788 - 46658734
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggag 54  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||    
T  46658788 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggag 46658734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 11676971 - 11677020
Alignment:
Q  3 tcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacg 51  Q
    |||||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  11676971 tcattaattgaatgaacctaaaaaatcaattttgcttataattaaaaacg 11677020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 14206415 - 14206476
Alignment:
Q  2 atcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||||| ||||||||| |||| |||||||||||| ||  |||||||||| |||||    
T  14206415 atcattaattgaacgaacctaaaaagtcaaatttgcttatatttagaaacggagggagtata 14206476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 14215105 - 14215166
Alignment:
Q  2 atcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||||| ||||||||| |||| |||||||||||| ||  |||||||||| |||||    
T  14215105 atcattaattgaacgaacctaaaaagtcaaatttgcttatatttagaaacggagggagtata 14215166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20353113 - 20353060
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacgga 53  Q
    |||||||||||||||||||||||| |||  |||||||||||| || ||||||||    
T  20353113 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaacgga 20353060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26153999 - 26154060
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || |||||||| ||||    
T  26153999 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaagacggagggagtat 26154060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45833246 - 45833189
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggg 57  Q
    |||||||||||||||||||||||| |||  |||||| ||||| || ||||||||||||    
T  45833246 catcattaattgaatgaacctaaaaagtaaaatttgtttatatttaaaaacggagggg 45833189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3498350 - 3498294
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||| ||||| |||  |||||||||||| || |||||||||||    
T  3498350 catcattaattgaatgaatctaaaaagtaaaatttgcttatattttaaaacggaggg 3498294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6580561 - 6580505
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| ||||||||||||||  ||||| |||||||||| || |||||||||||    
T  6580561 catcattaaatgaatgaacctaaaatgtcaattttgcttatatttaaaaacggaggg 6580505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27234914 - 27234870
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataatt 44  Q
    |||||||||||||||||||||||| |||  |||||||||||||||    
T  27234914 catcattaattgaatgaacctaaaaagtaaaatttgcttataatt 27234870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28003234 - 28003178
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    ||||| |||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  28003234 catcaataattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 28003178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28003262 - 28003318
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  28003262 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 28003318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 30005930 - 30005870
Alignment:
Q  3 tcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||| ||| |||||| ||| |||||| || ||||||||||| |||||    
T  30005930 tcattaattgaatgaaccaaaaaagtcaattttacttatatttaaaaacggagggagtata 30005870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46658816 - 46658872
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||| ||||| |||  |||||||||||| || |||||||||||    
T  46658816 catcattaattgaatgaatctaaaaagtaaaatttgcttatattttaaaacggaggg 46658872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 58384 - 58438
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggag 54  Q
    |||||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  58384 catcattaattgaatgaacctaaaaagtcaaatttgcttataattggaaacggag 58438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44282321 - 44282265
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||  |||||||||    
T  44282321 catcattaattgaatgaacctaaagagtcaaatttgcttataattggcaacggaggg 44282265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43484016 - 43484077
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| || ||||||||||| ||||    
T  43484016 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaacggagggagtat 43484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9303360 - 9303307
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc--aatttgcttataattgaaaacgga 53  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||    
T  9303360 catcattaattgaatgaacctaaa-agtcaaaatttgcttataattaaaaacgga 9303307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 899302 - 899252
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaac 50  Q
    |||||||||||||||||||||||||||| || |||||||||| || |||||    
T  899302 catcattaattgaatgaacctaaatagtaaattttgcttatatttaaaaac 899252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9203468 - 9203530
Alignment:
Q  1 catcattaattgaatgaacctaaatagtca-atttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||| ||| |||||  |||||||||| || ||||||||||| |||||    
T  9203468 catcattaattgaatgaaccaaaaaagtcagttttgcttatatttaaaaacggagggagtata 9203530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1875744 - 1875703
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttata 41  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  1875744 catcattaattgaatgaacctaaaaagtcaaatttgcttata 1875703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8568904 - 8568937
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8568904 catcattaattgaatgaacctaaaaagtcaattt 8568937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39655473 - 39655432
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttata 41  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  39655473 catcattaattgaatgaacctaaaaagtcaaatttgcttata 39655432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3105867 - 3105930
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc--aatttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||| ||| |||||| || |||||    
T  3105867 catcattaattgaatgaacttaaaaagtcaaaatttgcttataagtgacaacggatggagtata 3105930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17116533 - 17116477
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||| | |||| |||||||||||| ||  ||||||||||    
T  17116533 catcattaattgaatgaacctataaagtcaaatttgcttatattttgaaacggaggg 17116477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18126111 - 18126055
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || |||||||||||    
T  18126111 catcattaaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggaggg 18126055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32480280 - 32480336
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  32480280 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 32480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34194644 - 34194700
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  34194644 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 34194700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35063516 - 35063461
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||| ||| |||||| |||||||||| || |||||||||||    
T  35063516 catcattaattgaatgaacc-aaaaagtcaattttgcttatatttaaaaacggaggg 35063461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37922896 - 37922952
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  37922896 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 37922952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 34459070 - 34459122
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacgga 53  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  34459070 atcattaattgaatgaacctaaaaattcaaatttgcttataattgaaaacgga 34459122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34595766 - 34595828
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||||| |||| ||||| || ||||||||||| |||||    
T  34595766 catcattaattgaatgaacctaaaaagtcaattttgtttatatttaaaaacggagggagtata 34595828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15185909 - 15185958
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaa 49  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  15185909 catcattaattgaatgaacctaaaaagtaaaatttgcttataattgaaaa 15185958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50519346 - 50519391
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattg 45  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||    
T  50519346 catcattaattgaatgaacctaaaaagtcaaatttgcttataattg 50519391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 51126161 - 51126100
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| || ||||||||||| ||||    
T  51126161 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggagggagtat 51126100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18592401 - 18592345
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||    
T  18592401 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaacggaggg 18592345  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24156195 - 24156139
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||    
T  24156195 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaacggaggg 24156139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34166168 - 34166112
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||    
T  34166168 catcattaattgaatgaacctaaaaagtcaattttgcttatatttagaaacggaggg 34166112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8014239 - 8014176
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtatac 63  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || |||||||| ||||||    
T  8014239 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaatacggagggagtatac 8014176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48088066 - 48088011
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagg 55  Q
    ||||||||||||||||||| |||| |||||| |||||||||| || ||||||||||    
T  48088066 catcattaattgaatgaacataaaaagtcaattttgcttatatttaaaaacggagg 48088011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25856094 - 25856156
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| |||||    
T  25856094 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggagggagtata 25856156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 40545381 - 40545435
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaatttgcttataattgaaaacggaggg 56  Q
    |||||||| |||||||||||||| | ||||||| |||||| || |||||||||||    
T  40545381 atcattaagtgaatgaacctaaaaaatcaatttacttatatttaaaaacggaggg 40545435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51975208 - 51975270
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||||||||||| |||| ||| || |||||||||| || ||||||||||| |||||    
T  51975208 catcattaattgaatgaacttaaaaagtaaaatttgcttatattttaaaacggagggagtata 51975270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 55131592 - 55131542
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaac 50  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| |||||    
T  55131592 catcattaattgaatgaacctaaaaagtcaaatttgtttataattaaaaac 55131542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1945447 - 1945480
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  1945447 catcattaattgaatgaacctaaaaagtcaattt 1945480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3517119 - 3517063
Alignment:
Q  1 catcattaattgaatgaacctaaatagtca--atttgcttataattgaaaacggagg 55  Q
    ||||||||||||||| |||||||| | |||  |||||||||||||||| ||||||||    
T  3517119 catcattaattgaataaacctaaacaatcacaatttgcttataattgacaacggagg 3517063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16200223 - 16200162
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| ||| || ||||||||||||||  ||||||||| ||||    
T  16200223 catcattaactgaatgaacctaaaaagttaaatttgcttataattggtaacggagggagtat 16200162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23511918 - 23511885
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  23511918 catcattaattgaatgaacctaaaaagtcaattt 23511885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23511960 - 23511993
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  23511960 catcattaattgaatgaacctaaaaagtcaattt 23511993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 24529629 - 24529596
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24529629 catcattaattgaatgaacctaaaaagtcaattt 24529596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30051399 - 30051346
Alignment:
Q  1 catcattaattgaatgaacctaaatag-tcaatttgcttataattgaaaacgga 53  Q
    |||||||||||||||||||||||| || | |||||||||||| || ||||||||    
T  30051399 catcattaattgaatgaacctaaaaagttaaatttgcttatattttaaaacgga 30051346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34595746 - 34595713
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  34595746 catcattaattgaatgaacctaaaaagtcaattt 34595713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34709659 - 34709720
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  34709659 catcattaaatgaatgaacctaaaaagtcaattttgcttatattaaaaaacggagggagtat 34709720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9968357 - 9968301
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  ||||| |||||| || |||||||||||    
T  9968357 catcattaattgaatgaacctaaaaagtaaaatttacttatatttaaaaacggaggg 9968301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 23511921 - 23511953
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaattt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  23511921 atcattaattgaatgaacctaaaaagtcaattt 23511953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23710891 - 23710835
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    ||||| |||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  23710891 catcaataattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 23710835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34166216 - 34166184
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  34166216 catcattaattgaatgaacctaaaaagtcaatt 34166184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 44495738 - 44495690
Alignment:
Q  9 attgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||| |||||| |||||||||| || |||||||||||    
T  44495738 attgaatgaacctaaaaagtcaaatttgcttatatttaaaaacggaggg 44495690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44551282 - 44551338
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||||||||| ||| |||| |||||| |||||||||||||  ||||||||||    
T  44551282 catcattaattgaataaacttaaaaagtcaattttgcttataattagaaacggaggg 44551338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48079600 - 48079656
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    ||||| |||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  48079600 catcaataattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 48079656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 48088083 - 48088135
Alignment:
Q  5 attaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||||||||| |||| |||||| |||||||||| || |||||||||||    
T  48088083 attaattgaatgaacataaaaagtcaattttgcttatatttaaaaacggaggg 48088135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 53403047 - 53402995
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacgg 52  Q
    ||||||||||||||||||| |||| |||||| |||||||||| || |||||||    
T  53403047 catcattaattgaatgaacataaaaagtcaattttgcttatatttaaaaacgg 53402995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 55501289 - 55501341
Alignment:
Q  4 cattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagg 55  Q
    ||||||||||||||||||||| |||  |||||||||||| || ||||||||||    
T  55501289 cattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaacggagg 55501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 56420515 - 56420571
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  56420515 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttagaaacggaggg 56420571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9447902 - 9447957
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||||| || ||||||||||  |||||||||    
T  9447902 catcattaattgaatgaacctaaaaagtcaaatttcttataattgggaacggaggg 9447957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20821497 - 20821444
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacgga 53  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||    
T  20821497 catcattaattgaatgaacctaaaaagtcaaatttgcttatgattaaaaacgga 20821444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25995626 - 25995687
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||| |||||||||||| || ||||||||||| ||||    
T  25995626 catcattaaatgaatgaacctaaaaagtcaaatttgcttatatttaaaaacggagggagtat 25995687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17005014 - 17004958
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| | |||| |||||||||| || |||||||||||    
T  17005014 catcattaattgaatgaacctaaaaaatcaattttgcttatatttaaaaacggaggg 17004958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 51486481 - 51486429
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacgga 53  Q
    ||||||||||||||||||||||| |||||| |||||||||| || ||||||||    
T  51486481 atcattaattgaatgaacctaaaaagtcaattttgcttatatttaaaaacgga 51486429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 54008291 - 54008347
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||    
T  54008291 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaacggaggg 54008347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 48126774 - 48126723
Alignment:
Q  5 attaattgaatgaacctaaatagtcaatttgcttataattgaaaacggaggg 56  Q
    ||||| |||||||||||||| |||||||||||||||| || |||| ||||||    
T  48126774 attaaatgaatgaacctaaaaagtcaatttgcttatatttaaaaatggaggg 48126723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 378772 - 378834
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || ||||||||||| |||||    
T  378772 catcattaaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggagggagtata 378834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16127804 - 16127742
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||  ||||||||| ||||| ||||| ||||| |||||    
T  16127804 catcattaattgaatgaacctaaaaagtaaaatttgcttgtaattaaaaacagagggagtata 16127742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32814712 - 32814774
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||   ||||||||| |||||    
T  32814712 catcattaattgaatgaacctaaaaagtcaaatttgcttatattttggaacggagggagtata 32814774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34935594 - 34935540
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggag 54  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||    
T  34935594 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaacggag 34935540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17005044 - 17005077
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  17005044 catcattaattgaatgaacctaaaaagtcaattt 17005077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17940244 - 17940183
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || ||||||||||| ||||    
T  17940244 catcattaaatgaatgaacctaaaaagtaaattttgcttatatttaaaaacggagggagtat 17940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34205619 - 34205558
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| ||||    
T  34205619 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggagggagtat 34205558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40326522 - 40326555
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  40326522 catcattaattgaatgaacctaaaaagtcaattt 40326555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44435258 - 44435319
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| ||||    
T  44435258 catcattaattgaatgaacctaaaaagtgaaatttgcttatattttgaaacggagggagtat 44435319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 44544214 - 44544181
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  44544214 catcattaattgaatgaacctaaaaagtcaattt 44544181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 54985579 - 54985546
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  54985579 catcattaattgaatgaacctaaagagtcaattt 54985546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1453442 - 1453386
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||| ||||||||||||| | |||| ||||||||||||| | |||||||||    
T  1453442 catcattaatcgaatgaacctaaaaaatcaattttgcttataatttagaacggaggg 1453386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22995780 - 22995836
Alignment:
Q  1 catcattaattgaatgaacctaaatag-tcaatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| ||   |||||||||||| || |||||||||||    
T  22995780 catcattaattgaatgaacctaaaaagcaaaatttgcttatatttaaaaacggaggg 22995836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29726358 - 29726414
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || ||||||||    
T  29726358 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaagacggaggg 29726414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29726450 - 29726506
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || ||||||||    
T  29726450 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaagacggaggg 29726506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29726542 - 29726598
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || ||||||||    
T  29726542 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaagacggaggg 29726598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33638998 - 33639054
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || |||||||||||    
T  33638998 catcattaaatgaatgaacctaaaaagtgaattttgcttatatttaaaaacggaggg 33639054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 54690494 - 54690438
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggaggg 56  Q
    ||||||||||||||||||| |||| |||| |||||||||||| || | |||||||||    
T  54690494 catcattaattgaatgaacataaaaagtcaaatttgcttatatttaagaacggaggg 54690438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 63524 - 63578
Alignment:
Q  3 tcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||| |||||||||    
T  63524 tcattaattaaatgaacctaaaaagtcaaatttgcttataattgataacggaggg 63578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 63494 - 63438
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggaggg 56  Q
    ||||||||||||||||||| |||| |||| ||||| ||||||||||| ||| |||||    
T  63494 catcattaattgaatgaacgtaaaaagtcaaatttacttataattgataacagaggg 63438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39015619 - 39015557
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||  ||||||||| |||||    
T  39015619 catcattaattgaatgaacctaaaaagtcaaatttgtttataattggcaacggagggagtata 39015557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34598946 - 34598999
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacgga 53  Q
    |||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||    
T  34598946 catcattaattgaatgaatctaaaaagtcaaatttacttataattgaaaacgga 34598999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35049988 - 35049933
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc--aatttgcttataattgaaaacggagg 55  Q
    |||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||    
T  35049988 catcattaattgaatgaacctaaa-agtcaaaatttacttataattgaaaacggagg 35049933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 47991833 - 47991772
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||| | ||||||||| ||||    
T  47991833 catcattaaatgaatgaacctaaaaagtcaaatttgcttataattcataacggagggagtat 47991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27146108 - 27146164
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||    
T  27146108 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaacggaggg 27146164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2091802 - 2091747
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagg 55  Q
    |||||||||||||||||||||||| |||| ||||| |||||| || ||||||||||    
T  2091802 catcattaattgaatgaacctaaaaagtcaaatttacttatattttaaaacggagg 2091747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28237156 - 28237199
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataatt 44  Q
    |||||||||||||||||||||||| | | |||||||||||||||    
T  28237156 catcattaattgaatgaacctaaaaattaaatttgcttataatt 28237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6763418 - 6763480
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| |||||    
T  6763418 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggagggagtata 6763480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 12062249 - 12062195
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagg 55  Q
    ||||||||||||||||||||||| |||||| ||| |||||| || ||||||||||    
T  12062249 atcattaattgaatgaacctaaaaagtcaattttccttatatttaaaaacggagg 12062195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 15013709 - 15013659
Alignment:
Q  5 attaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggag 54  Q
    |||||||||||||| ||||| |||||| ||| |||||||||||||||||||    
T  15013709 attaattgaatgaatctaaaaagtcaaatttacttataattgaaaacggag 15013659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25378341 - 25378403
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| | |  |||||||||||| || ||||||||||| |||||    
T  25378341 catcattaattgaatgaacctaaaaaataaaatttgcttatattttaaaacggagggagtata 25378403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38847386 - 38847440
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggag 54  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||||||||    
T  38847386 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaacggag 38847440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3160806 - 3160765
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttata 41  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  3160806 catcattaattgaatgaacctaaaaagtcaaatttgcttata 3160765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11343747 - 11343808
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||| |  |||||||| ||||    
T  11343747 catcattaattgaatgaaccaaaaaagtcaaatttgcttataattaaggacggagggagtat 11343808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11501767 - 11501828
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||| |  |||||||| ||||    
T  11501767 catcattaattgaatgaaccaaaaaagtcaaatttgcttataattaaggacggagggagtat 11501828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12447538 - 12447579
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataa 42  Q
    |||||||||||||||||| ||||| ||| |||||||||||||    
T  12447538 catcattaattgaatgaatctaaaaagttaatttgcttataa 12447579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12993635 - 12993676
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttata 41  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  12993635 catcattaattgaatgaacctaaaaagtcaaatttgcttata 12993676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 21852492 - 21852443
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaac 50  Q
    ||||||||||||||||||||||| |||||| |||||||||| || |||||    
T  21852492 atcattaattgaatgaacctaaaaagtcaattttgcttatatttaaaaac 21852443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24023449 - 24023510
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||||| |||||||||||| ||| || |||||||||| || ||||||||||| ||||    
T  24023449 catcattaattaaatgaacctaaaaagttaattttgcttatatttaaaaacggagggagtat 24023510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34038004 - 34038037
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  34038004 catcattaattgaatgaacctaaaaagtcaattt 34038037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34061999 - 34061938
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||| ||||| || ||||||||||| ||||    
T  34061999 catcattaattgaatgaacctaaaaagtaaaatttgtttatatttaaaaacggagggagtat 34061938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48605154 - 48605195
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttata 41  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  48605154 catcattaattgaatgaacctaaaaagtcaaatttgcttata 48605195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50998360 - 50998315
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattg 45  Q
    |||||||||||||||||||||||| | || ||||||||||||||||    
T  50998360 catcattaattgaatgaacctaaaaaatcaaatttgcttataattg 50998315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50998388 - 50998433
Alignment:
Q  1 catcattaattgaatgaacctaaatag-tcaatttgcttataattg 45  Q
    |||||||||||||||||||||||| || | ||||||||||||||||    
T  50998388 catcattaattgaatgaacctaaaaagataaatttgcttataattg 50998433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1252187 - 1252143
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataatt 44  Q
    |||||||||||||||||||||||| ||| || |||||||||||||    
T  1252187 catcattaattgaatgaacctaaaaagttaattttgcttataatt 1252143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3606317 - 3606273
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataatt 44  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||    
T  3606317 catcattaattgaatgaatctaaaaagtcaattttgcttataatt 3606273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5852744 - 5852688
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  5852744 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 5852688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7230065 - 7230009
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||| ||||| ||| || |||||||||| || |||||||||||    
T  7230065 catcattaattgaatgaatctaaaaagttaattttgcttatatttaaaaacggaggg 7230009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17988278 - 17988226
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacgg 52  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||    
T  17988278 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacgg 17988226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37255210 - 37255266
Alignment:
Q  1 catcattaattgaatgaacctaaatagtca-atttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||  ||||||||||    
T  37255210 catcattaattgaatgaacctaaaaagtaatatttgcttatatttagaaacggaggg 37255266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46518029 - 46518085
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  46518029 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 46518085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47011328 - 47011384
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||| ||||||    
T  47011328 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaatggaggg 47011384  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47912628 - 47912572
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| ||  ||||||||||    
T  47912628 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttagaaacggaggg 47912572  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49363468 - 49363524
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||| ||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  49363468 catcatcaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 49363524  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29112340 - 29112279
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| | | || ||||||||||||| ||||||||||| ||||    
T  29112340 catcattaattgaatgaacctaaaaaataaaatttgcttataattaaaaacggagggagtat 29112279  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34186439 - 34186495
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| | |||| |||||||||| || |||||||||||    
T  34186439 catcattaattgaatgaacctaaaaactcaattttgcttatatttaaaaacggaggg 34186495  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35245692 - 35245748
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||||    
T  35245692 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggaggg 35245748  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36137099 - 36137143
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaatttgcttataattg 45  Q
    |||||||||||||||||||||||| |||||| || ||||||||||    
T  36137099 catcattaattgaatgaacctaaagagtcaaattacttataattg 36137143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3161310 - 3161364
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggag 54  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||    
T  3161310 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaacggag 3161364  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13420518 - 13420580
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||| |||||||||||| | |||| |||||||||| || ||||||||||| |||||    
T  13420518 catcattaattaaatgaacctaaaaaatcaaatttgcttatatttaaaaacggagggagtata 13420580  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14064866 - 14064804
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||  ||||| |||||| || ||||||||||| |||||    
T  14064866 catcattaattgaatgaacctaaaaagtaaaatttacttatatttaaaaacggagggagtata 14064804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14550116 - 14550178
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || ||||||||||| |||||    
T  14550116 catcattaaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggagggagtata 14550178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33696739 - 33696801
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| |||||    
T  33696739 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggagggagtata 33696801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43585551 - 43585489
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||  |||||| ||||| || ||||||||||| |||||    
T  43585551 catcattaattgaatgaacctaaaaagtaaaatttgtttatatttaaaaacggagggagtata 43585489  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3781036 - 3780975
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || |||||||| ||||    
T  3781036 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaagacggagggagtat 3780975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 6638282 - 6638225
Alignment:
Q  5 attaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||| ||| || |||||||||| || ||||||||||| ||||    
T  6638282 attaattgaatgaacctaaaaagtaaaatttgcttatatttaaaaacggagggagtat 6638225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15966727 - 15966760
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15966727 catcattaattgaatgaacctaaaaagtcaattt 15966760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19784607 - 19784668
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| ||||    
T  19784607 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggagggagtat 19784668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 24230979 - 24230946
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24230979 catcattaattgaatgaacctaaaaagtcaattt 24230946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36964286 - 36964253
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  36964286 catcattaattgaatgaacctaaaaagtcaattt 36964253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43585579 - 43585632
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacgga 53  Q
    |||||||||||||||||||||||| ||| || |||||||||| || ||||||||    
T  43585579 catcattaattgaatgaacctaaaaagtaaattttgcttatatttaaaaacgga 43585632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 4151240 - 4151272
Alignment:
Q  2 atcattaattgaatgaacctaaatagtcaattt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  4151240 atcattaattgaatgaacctaaaaagtcaattt 4151272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13359217 - 13359161
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| |  |||||||||||    
T  13359217 catcattaaatgaatgaacctaaaaagtcaattttgcttatattaaaaaacggaggg 13359161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13461606 - 13461550
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || ||||||||    
T  13461606 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaatacggaggg 13461550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13461634 - 13461690
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| |  |||||||||||    
T  13461634 catcattaaatgaatgaacctaaaaagtcaattttgcttatattaaaaaacggaggg 13461690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19784590 - 19784534
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  19784590 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 19784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20362033 - 20361977
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||| ||||| |||  |||||||||||| || |||||||||||    
T  20362033 catcattaattgaatgaatctaaaaagtaaaatttgcttatatttaaaaacggaggg 20361977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26168272 - 26168328
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  26168272 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 26168328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27990441 - 27990485
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataatt 44  Q
    |||||||||||||||||||||||| |||  |||||||||||||||    
T  27990441 catcattaattgaatgaacctaaaaagtgaaatttgcttataatt 27990485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34186411 - 34186355
Alignment:
Q  1 catcattaattgaatgaacctaaatagtca-atttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||||  |||||||||| ||  ||||||||||    
T  34186411 catcattaattgaatgaacctaaaaagtcatttttgcttatattttgaaacggaggg 34186355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38860884 - 38860940
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||| ||| | |||| |||||||||| || |||||||||||    
T  38860884 catcattaattgaatgaaccaaaaaaatcaattttgcttatatttaaaaacggaggg 38860940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11668 - 11730
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaattt-gcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| ||  |||||||||| |||||    
T  11668 catcattaattgaatgaacctaaaaagtaaatttggcttatatttagaaacggagggagtata 11730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17518 - 17572
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggag 54  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || |||||||||    
T  17518 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaaaacggag 17572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2795394 - 2795448
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggag 54  Q
    |||||||||||||||||||||||| |||  |||||||||||| || |||||||||    
T  2795394 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggag 2795448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29573870 - 29573808
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||| |||||| ||||| |||||| |||||||||| || ||||||||||| |||||    
T  29573870 catcattaatttaatgaatctaaaaagtcaattttgcttatatttaaaaacggagggagtata 29573808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35607471 - 35607409
Alignment:
Q  1 catcattaattgaatgaacctaaatagtc-aatttgcttataattgaaaacggagggggtata 62  Q
    |||||||||||||||||||||||| |||| ||||| |||||| ||  |||||||||| |||||    
T  35607471 catcattaattgaatgaacctaaaaagtcaaatttacttatattttgaaacggagggagtata 35607409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4102004 - 4101943
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||||| ||| |||||| || ||||||||||| ||||    
T  4102004 catcattaaatgaatgaacctaaaaagtcaattttacttatatttaaaaacggagggagtat 4101943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4898221 - 4898160
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| ||||    
T  4898221 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttagaaacggagggagtat 4898160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4945615 - 4945554
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| ||||    
T  4945615 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttagaaacggagggagtat 4945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26567720 - 26567781
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    ||||| |||||||||||||||||| |||  |||||||||||| || ||||||||||| ||||    
T  26567720 catcaataattgaatgaacctaaaaagtaaaatttgcttatattttaaaacggagggagtat 26567781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30202568 - 30202629
Alignment:
Q  1 catcattaattgaatgaacctaaatagtca-atttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||||  |||||||||| ||  |||||||||| ||||    
T  30202568 catcattaattgaatgaacctaaaaagtcagttttgcttatatttagaaacggagggagtat 30202629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33363643 - 33363704
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggagggggtat 61  Q
    ||||||||| |||||||||||||| |||||| |||||||||| || || |||||||| ||||    
T  33363643 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttaaagacggagggagtat 33363704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37486083 - 37486144
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggagggggtat 61  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  |||||||||| ||||    
T  37486083 catcattaattgaatgaacctaaaaagtaaaatttgcttatatttagaaacggagggagtat 37486144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5094896 - 5094840
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| |  |||||||||||    
T  5094896 catcattaaatgaatgaacctaaaaagtcaattttgcttatattaaaaaacggaggg 5094840  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15178070 - 15178008
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa--tttgcttataattgaaaacggagggggtata 62  Q
    ||||||||||||||||||| |||| ||||||  ||||||||||||  ||||||||||| |||||    
T  15178070 catcattaattgaatgaacttaaa-agtcaaaatttgcttataataaaaaacggagggagtata 15178008  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19908561 - 19908505
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || |||||||||||    
T  19908561 catcattaaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggaggg 19908505  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 20556674 - 20556726
Alignment:
Q  5 attaattgaatgaacctaaatagtcaattt-gcttataattgaaaacggaggg 56  Q
    ||||| |||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  20556674 attaaatgaatgaacctaaaaaatcaattttgcttatatttgaaaacggaggg 20556726  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21208976 - 21209032
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| ||| || |||||||||| || |||||||||||    
T  21208976 catcattaaatgaatgaacctaaaaagtgaattttgcttatattttaaaacggaggg 21209032  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26567692 - 26567636
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  26567692 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 26567636  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40340553 - 40340609
Alignment:
Q  1 catcattaattgaatgaacctaaatagt-caatttgcttataattgaaaacggaggg 56  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||  ||||||||||    
T  40340553 catcattaattgaatgaacctaaaaagtaaaatttgcttatattttgaaacggaggg 40340609  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44949398 - 44949342
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||||| |||||| |||||||||| ||  ||||||||||    
T  44949398 catcattaaatgaatgaacctaaaaagtcaattttgcttatatttagaaacggaggg 44949342  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22500 - 22444
Alignment:
Q  1 catcattaattgaatgaacctaaatagtcaa-tttgcttataattgaaaacggaggg 56  Q
    ||||||||| |||||||||||| | |||||| |||||||||| || |||||||||||    
T  22500 catcattaagtgaatgaacctacaaagtcaattttgcttatatttaaaaacggaggg 22444  T

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