View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_low_12 (Length: 315)
Name: NF17934_low_12
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 4982318 - 4982020
Alignment:
| Q |
1 |
caattgtcacctttggatattcaaaagcttaagaaacatgcacaatccaagattgnnnnnnntaacaaggttattaagctttcaactttttcagttacct |
100 |
Q |
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| T |
4982318 |
caattgtcacctttggatattcaaaagcttaagaaacatgcacaatccaagattgaaaaaaataacaaggttattaagctttcaactttttcagttactt |
4982219 |
T |
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| Q |
101 |
gtgcttatttgttggcatgtgcgatcaaagttgaccaaccaaaatccaccaaagtaccttttatttttagtgtggattgtaggccacgtttggatccacc |
200 |
Q |
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| T |
4982218 |
gtgcttatttgttggcatgtacgataaaagttgaccaaccaaaatccaacaaggtaccttttatttttagtgtggattgtaggccacgtttggatccacc |
4982119 |
T |
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| Q |
201 |
aattaatgcaaattattttggaaattgtgttgtgtcaaaattagttttgggtgaaaccgaggaatttttaaaagatgatggatttattagtgctcttga |
299 |
Q |
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| T |
4982118 |
aattaatgcaaattattttggaaattgtgttgtgtcaaaattagttttgggtgaaaccgaggaatttttaaaagatgatggatttattagtgctcttga |
4982020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 80 - 297
Target Start/End: Complemental strand, 4994893 - 4994676
Alignment:
| Q |
80 |
tttcaactttttcagttacctgtgcttatttgttggcatgtgcgatcaaagttgaccaaccaaaatccaccaaagtaccttttatttttagtgtggattg |
179 |
Q |
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| T |
4994893 |
tttcaacttttgcggttacatgtgcttatttgttgtcattaggggttaaagttgaccaacaaaaacccaataaggcatttttggtttttgctgttgattg |
4994794 |
T |
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| Q |
180 |
taggccacgtttggatccaccaattaatgcaaattattttggaaattgtgttgtgtcaaaattagttttgggtgaaaccgaggaatttttaaaagatgat |
279 |
Q |
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| T |
4994793 |
taggtcacgcttggatccaccaattaatgaaaattattttgggaattgtattgtgtcaagattagttgtgcatgaaactgaggcattgttggaagatggt |
4994694 |
T |
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| Q |
280 |
ggatttattagtgctctt |
297 |
Q |
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| T |
4994693 |
gggtttattagtgctctt |
4994676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 4978134 - 4977910
Alignment:
| Q |
80 |
tttcaactttttcagttacctgtgcttatttgttggcatgtgcgatcaaagttgaccaaccaaaatccaccaaagtaccttttatttttagtgtggattg |
179 |
Q |
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| T |
4978134 |
tttcaacttttgcggttacttgtgcttatttgttggcattagcggttaaagttgacaaaccaaaatctaataagacagcttttgtttttactatcgatag |
4978035 |
T |
|
| Q |
180 |
taggccacgtttggatccaccaattaatgcaaattattttggaaattgtgttgtgtcaaaattagttttgggtgaaaccgagg-----aatttttaaaag |
274 |
Q |
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| T |
4978034 |
taggtcacgtttggatccaccaattaatggaaattattttgggaattgtcttgtgtcacggttggttgtgagtgaaaccgaggcattatattgttgaaag |
4977935 |
T |
|
| Q |
275 |
atgatggatttattagtgctcttga |
299 |
Q |
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| T |
4977934 |
atgatggatttatatgtgctcttga |
4977910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 4994959 - 4994906
Alignment:
| Q |
2 |
aattgtcacctttggatattcaaaagcttaagaaacatgcacaatccaagattg |
55 |
Q |
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|||| |||| ||||||||||||||||||||||||| |||||||||| ||| ||| |
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| T |
4994959 |
aattatcacttttggatattcaaaagcttaagaaatatgcacaatctaaggttg |
4994906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 4978200 - 4978152
Alignment:
| Q |
2 |
aattgtcacctttggatattcaaaagcttaagaaacatgcacaatccaa |
50 |
Q |
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| T |
4978200 |
aattttcacttttagatattcaaaagcttaagaaatatgcacaatccaa |
4978152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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