View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_low_13 (Length: 304)

Name: NF17934_low_13
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_low_13
NF17934_low_13
[»] chr7 (1 HSPs)
chr7 (13-304)||(2295270-2295561)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 2295561 - 2295270
Alignment:
Q  13 aatatcacccaattttcctaaacacaaataaaatagaaaaccaaacaaatttagaaacatatcacaaatgaagcaacatttgaggaagattaatttgaag 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2295561 aatatcagccaattttcctaaacacaaataaaatagaaaaccaaacaaatttagaaacatatcataaatgaagcaacatttgaggaagattaatttgaag 2295462  T
Q  113 agaaaaaatattggtcataccatttttatcaggaagaacaagagacacaattgatgcaccccaattggtgactttcaaagaaagaccacctttcttcagc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295461 agaaaaaatattggtcataccatttttatcaggaagaacaagagacacaattgatgcaccccaattggtgactttcaaagaaagaccacctttcttcagc 2295362  T
Q  213 tcaaatattcctatcttttctttttcatcatagccattgacaaatccaaaagctactatgagtagacatagaagaagcacaaagatcttggt 304  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2295361 tcaaatattcctaccttttctttttcatcagagccattgacaaatccaaaagctactatgagtagacatagaagaagcacaaagatcttggt 2295270  T

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