View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_low_15 (Length: 290)
Name: NF17934_low_15
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 41229145 - 41228877
Alignment:
| Q |
1 |
tgacgcatcactttataatagtcgtctctaacactatcatgaccaaatccatgatgattagccgaagcttcccaattaggtacaaaatcaaaagggtcgt |
100 |
Q |
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| T |
41229145 |
tgacgcatcactttataatagtcgtctctaacactatcatgaccaaatccatgatgattagccgaagcttcccaattaggtacaaaatcaaaagggtcgt |
41229046 |
T |
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| Q |
101 |
gaggaatgaccttaaattctatagtagatgggttccacaatacaatattaactcagaagcataaaacagaaagagttccatgaacattaccataacttaa |
200 |
Q |
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| T |
41229045 |
gaggaatgaccttaaattctatagtagatgggttccacaatacaatattaactcagaagcataaaacagaaagagttccatgaacattaccataacttaa |
41228946 |
T |
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| Q |
201 |
aatatcaaaaccaaaatcatactaacagatacactaaatctaacttcacccttggtcaatctaatttga |
269 |
Q |
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| T |
41228945 |
aatatcaaaaccaaaatcatactaacagatacactaaatctaacttcacccttggccaatctaatttga |
41228877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 42777514 - 42777399
Alignment:
| Q |
101 |
gaggaatgaccttaaattctatagtagatgggttccacaatacaatattaac-tcagaagcataaaacag--aaagagttccatgaacattaccataact |
197 |
Q |
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| T |
42777514 |
gaggaatgagcttgaattctttagtagatgggttccacaatataatattttctttatatgcacaaaccagacaaagaattccatgaacactaccagaacc |
42777415 |
T |
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| Q |
198 |
taaaatatcaaaacca |
213 |
Q |
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| T |
42777414 |
taaaatatcaaaacca |
42777399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 16487213 - 16487289
Alignment:
| Q |
73 |
caattaggtacaaaatcaaaagggtcgtgaggaatgaccttaaattctatagtagatgggttccacaatacaatatt |
149 |
Q |
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| T |
16487213 |
caattaggttcagaatctaaagggctgggaggaatgtgcttaaattccatagtagatggattccacaataaaatatt |
16487289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 29418106 - 29418153
Alignment:
| Q |
72 |
ccaattaggtacaaaatcaaaagggtcgtgaggaatgaccttaaattc |
119 |
Q |
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| T |
29418106 |
ccaattaggtccaaaatcaaaagggttgggaggaatgagcttaaattc |
29418153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 22945009 - 22944965
Alignment:
| Q |
101 |
gaggaatgaccttaaattctatagtagatgggttccacaatacaa |
145 |
Q |
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| T |
22945009 |
gaggaatgaccttgaattccctagtagttgggttccacaatacaa |
22944965 |
T |
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