View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_low_16 (Length: 270)
Name: NF17934_low_16
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 12425207 - 12425448
Alignment:
| Q |
14 |
ttcttcctcctccaaaagggaaatactgaaagctattatcattcactttattgaaatcaaaaccattactatcatgaaacctctccggtataaacttctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12425207 |
ttcttcctcctccaaaagggaaatactgaaagctattatcattcactttattaaaatcaaaaccagtactatcatgaaacctctccggtataaacttctc |
12425306 |
T |
|
| Q |
114 |
agcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtctttaaaggtatttcatatccacctatgttgcacgcttcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12425307 |
agcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttttaaaggtatttcatatccacctatgttgcacgcttcc |
12425406 |
T |
|
| Q |
214 |
ctgcattctctcatgagcaatgtagcaggtgggtgtaacctc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
12425407 |
ctgcattctctcatgagcaatgtagcaggtgggtgtaacctc |
12425448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 12268478 - 12268237
Alignment:
| Q |
14 |
ttcttcctcctccaaaagggaaatactgaaagctattatcattcactttattgaaatcaaaaccattactatcatgaaacctctccggtataaacttctc |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| |||||||||||||| |
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| T |
12268478 |
ttcttcctcctccaaaagggatgtactgaaagctattatcattcactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaacttctc |
12268379 |
T |
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| Q |
114 |
agcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtctttaaaggtatttcatatccacctatgttgcacgcttcc |
213 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
12268378 |
tgcatcagaccaatgattgggatctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcctatgttgcatgcttcc |
12268279 |
T |
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| Q |
214 |
ctgcattctctcatgagcaatgtagcaggtgggtgtaacctc |
255 |
Q |
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| T |
12268278 |
ctgcattctcttgtaagtattgcaccaggtgggtgtaacctc |
12268237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 55954877 - 55955121
Alignment:
| Q |
14 |
ttcttcctcctccaaaagggaaatactgaaagctattatcatt---cactttattgaaatcaaaaccattactatcatgaaacctctccggtataaactt |
110 |
Q |
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|||||||||| |||||||| | || | ||||||||||| ||| || |||||| |||||||||||| ||||||||| |||||| || ||||||||||| |
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| T |
55954877 |
ttcttcctcccccaaaaggcatgtaatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaactt |
55954976 |
T |
|
| Q |
111 |
ctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtctttaaaggtatttcatatccacctatgttgcacgct |
210 |
Q |
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|| |||||| ||||||||| ||||||||||||||||||||||||||||| ||| | | ||||||||| ||||||||||||||| |||||||||| ||| |
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| T |
55954977 |
ctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcaagct |
55955076 |
T |
|
| Q |
211 |
tccctgcattctctcatgagcaatgtagcaggtgggtgtaacctc |
255 |
Q |
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|||||||||||||| ||||| ||| |||||||||||||||| |
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| T |
55955077 |
tccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctc |
55955121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 55958476 - 55958677
Alignment:
| Q |
54 |
attcactttattgaaatcaaaaccattactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccat |
153 |
Q |
| |
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|||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||| || ||||||||||| |||||||| |
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| T |
55958476 |
attcactttattaaaatcaaaatatttactgtcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcacattgcccaa |
55958575 |
T |
|
| Q |
154 |
gcatttaatattaagttagtctttaaaggtatttcatatccacctatgttgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacc |
253 |
Q |
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||||||| || | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||| |
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| T |
55958576 |
gcatttactaacacattagtctttattggtatttcatatccacctatgttgcatgcttccctgcattctcttataagcaaagtagcaggtggatgtaacc |
55958675 |
T |
|
| Q |
254 |
tc |
255 |
Q |
| |
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|| |
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|
| T |
55958676 |
tc |
55958677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 41795686 - 41795856
Alignment:
| Q |
54 |
attcactttattgaaatcaaaaccattactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccat |
153 |
Q |
| |
|
|||||||||||| || |||||| | ||||| || |||||||||| ||||||| || || |||||| | |||| || |||||||||||| ||||||||| |
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| T |
41795686 |
attcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcatatcaatatttgggatctcttccgattgcccat |
41795785 |
T |
|
| Q |
154 |
gcatttaatattaagttagtctttaaaggtatttcatatccacctatgttgcacgcttccctgcattctct |
224 |
Q |
| |
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||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41795786 |
gcatttactatcacactagtctttataggtatttcatatccacctatgttgcacgcttccctgcattctct |
41795856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 7141710 - 7141631
Alignment:
| Q |
81 |
actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta |
160 |
Q |
| |
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|||||||| ||||||||| || |||||| ||||||||||| ||||| || ||||||||||| |||||||| ||||||| |
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| T |
7141710 |
actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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