View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_low_17 (Length: 253)

Name: NF17934_low_17
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_low_17
NF17934_low_17
[»] chr2 (15 HSPs)
chr2 (1-243)||(32534099-32534327)
chr2 (23-243)||(32174106-32174324)
chr2 (23-199)||(32147545-32147719)
chr2 (23-199)||(32156374-32156548)
chr2 (23-165)||(32212171-32212311)
chr2 (23-189)||(32118463-32118628)
chr2 (23-137)||(32182298-32182410)
chr2 (23-191)||(32152314-32152475)
chr2 (99-243)||(32182135-32182279)
chr2 (23-133)||(32157550-32157658)
chr2 (23-137)||(32153370-32153482)
chr2 (23-148)||(2821292-2821414)
chr2 (23-151)||(32207096-32207222)
chr2 (101-221)||(2821410-2821529)
chr2 (23-109)||(32110280-32110364)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 32534327 - 32534099
Alignment:
Q  1 tgataatggatacaataaggtatgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagcc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  32534327 tgataatggatacaataaggtatgaaattgtagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctc--caagcc 32534230  T
Q  101 aagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactat 200  Q
    ||            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534229 aa------------agaagaggtaaggaatgaagaaaatatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactat 32534142  T
Q  201 aaaacattaagctaagctaataagtaaatactctcatcctttg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32534141 aaaacattaagctaagctaataagtaaatactctcatcctttg 32534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 32174324 - 32174106
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||| | || ||||  ||||| |||||||||||||| |||||||    
T  32174324 tgaaattgcagaagagctaaccaaggattgtgatgctacagaatgcctacaagaccttataatattcctc--caagcaaagaaaatgatcaaggaagagg 32174227  T
Q  123 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactataaaacattaagctaagctaata 222  Q
    |||  ||||||||||  || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||    
T  32174226 taaaaaatgaagaaaacattaaagaagaaggtgaactaggtagagaaaatatataggtcatgtttggttctgtactgtaaaacattaagctaagctcata 32174127  T
Q  223 agtaaatactctcatcctttg 243  Q
    |||| | | ||||||||||||    
T  32174126 agtagacattctcatcctttg 32174106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 32147719 - 32147545
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||     
T  32147719 tgaaattgcagaagagttaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc--caagccaagaaaatgatcaaggaagaga 32147622  T
Q  123 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtacta 199  Q
    ||| || |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  32147621 taaagattgaagaaaataacaaagaagaaggtgaactaggtagagaaaatatataggccatgtttggttatgtacta 32147545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 32156548 - 32156374
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||  ||||||||||  || ||||||     
T  32156548 tgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaattc--ctccaagtaaagaaaatgaaaaaggaagaga 32156451  T
Q  123 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtacta 199  Q
    ||| ||| ||||||| | |||||||||||  |||| |||| || ||||||||||||||||||||||||| |||||||    
T  32156450 taaagaaggaagaaaatgtcaaagaagaatctgaactagggagtgaaaatatataggccatgtttggttatgtacta 32156374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 32212171 - 32212311
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || || ||||||     
T  32212171 tgaaattgcagaagagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatcc--ctccaagccaagaaaatcatgaaggaagaga 32212268  T
Q  123 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtag 165  Q
    |||  |||||||||| |||||||||||||  |||| |||||||    
T  32212269 taaaaaatgaagaaaatatcaaagaagaacatgaactaggtag 32212311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 32118628 - 32118463
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||| ||| ||||||| ||||||  ||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||| ||||||     
T  32118628 tgaaattgctgaagagctaacgaaggattgtgatgctacagaatgcctacaagaccttattgaatcc--ctccaagccaagaaaatgatcaaggaagaga 32118531  T
Q  123 t-aaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttgg 189  Q
    | |  ||||||||||| |||||||||||||  |||| ||| ||||||||||||||||| |||||||||    
T  32118530 tgatagaatgaagaaaatatcaaagaagaacatgaactagatagagaaaatatataggtcatgtttgg 32118463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 32182410 - 32182298
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    |||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||| |||||||    
T  32182410 tgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattc--ctgcaagccaagaaaatgatcaaggaagagg 32182313  T
Q  123 taaggaatgaagaaa 137  Q
    ||| |||||||||||    
T  32182312 taaagaatgaagaaa 32182298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 32152475 - 32152314
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||     |||||| ||  |||||||||||||||||||| |||||      
T  32152475 tgaaattgcagaagagctaacaaaggattgtgatgctacagaatgcctacaagacc-----aaatccttc--caagccaagaaaatgatcaaggaagaca 32152383  T
Q  123 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggtt 191  Q
    | |  |||||||||| |||||||| ||||  |||| || ||||||||||||||||||| ||||||||||    
T  32152382 ttaaaaatgaagaaattatcaaaggagaacatgaactatgtagagaaaatatataggctatgtttggtt 32152314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 32182279 - 32182135
Alignment:
Q  99 ccaagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtact 198  Q
    |||||||||||||| | ||||||  || ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||| |||||     
T  32182279 ccaagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtacc 32182180  T
Q  199 ataaaacattaagctaagctaataagtaaatactctcatcctttg 243  Q
     |||||||||||||||| || |||||||   | ||||||||||||    
T  32182179 gtaaaacattaagctaaactcataagtagtcattctcatcctttg 32182135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 32157658 - 32157550
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    |||||||| |||| |||| |||||||||  ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||     
T  32157658 tgaaattggagaagagctcacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattc--ctccaagccaagaaaatgatcaaggaagaga 32157561  T
Q  123 taaggaatgaa 133  Q
    | |||||||||    
T  32157560 ttaggaatgaa 32157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 32153482 - 32153370
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    |||||||| |||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |  ||||||||||||||||| |||||| | |||     
T  32153482 tgaaattgtagaagagctaacaaaggaggttgatgctgcagaatgcctacaataccttatcaaattc--ctccaagccaagaaaatcatcaaacatgaga 32153385  T
Q  123 taaggaatgaagaaa 137  Q
    ||| |||||||||||    
T  32153384 taaagaatgaagaaa 32153370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 2821292 - 2821414
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||| |  |||||||||||| ||| ||| || ||||||     
T  2821292 tgaaattgcagaagagctaacaaaggattgtgatgctacaaaatgcctacaagaccttatcaaattc--ctccaagccaag-aaacgatgaaggaagaga 2821388  T
Q  123 taaggaatgaagaaagtatcaaagaa 148  Q
    ||| |||||||||||  |||||||||    
T  2821389 taaagaatgaagaaaacatcaaagaa 2821414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 32207096 - 32207222
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 122  Q
    ||||||||||||| |||||||||||||   |||||| |||||||| ||| |||||||||||||||||  ||||||||||||||||||||||| |||||      
T  32207096 tgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatcc--ctccaagccaagaaaatgatcaaggaagaca 32207193  T
Q  123 taaggaatgaagaaagtatcaaagaagaa 151  Q
    | |  |||||||||| | |||||||||||    
T  32207194 ttaataatgaagaaaatgtcaaagaagaa 32207222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 2821410 - 2821529
Alignment:
Q  101 aagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactat 200  Q
    |||||||||||| | || ||| ||| ||||||||||| |||| ||||||||  |||| ||||||||||||||||||||||||||||||||| |||||||     
T  2821410 aagaaaatgatcgaggatgagataaagaatgaagaaaatatccaagaagaatctgaactaggtagagaaaatatataggccatgtttggttatgtacta- 2821508  T
Q  201 aaaacattaagctaagctaat 221  Q
     ||| | ||||||||||||||    
T  2821509 gaaataataagctaagctaat 2821529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 32110364 - 32110280
Alignment:
Q  23 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatg 109  Q
    |||||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||    
T  32110364 tgaaattgcagaagtgttaacaaaggatgttgatgctacagaatgcttacaagaccttatcaaattc--ctccaagccaagaaaatg 32110280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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