View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_low_20 (Length: 236)

Name: NF17934_low_20
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_low_20
NF17934_low_20
[»] chr2 (14 HSPs)
chr2 (1-36)||(9058476-9058511)
chr2 (1-34)||(30915461-30915494)
chr2 (1-34)||(33436169-33436202)
chr2 (1-34)||(38882882-38882915)
chr2 (4-36)||(10249454-10249486)
chr2 (1-32)||(28381724-28381755)
chr2 (1-32)||(40701478-40701509)
chr2 (4-33)||(32505720-32505749)
chr2 (4-32)||(4060685-4060713)
chr2 (1-33)||(5574557-5574589)
chr2 (1-33)||(7465804-7465836)
chr2 (4-32)||(13438343-13438371)
chr2 (1-29)||(19930889-19930917)
chr2 (1-29)||(28863458-28863486)
[»] chr7 (11 HSPs)
chr7 (1-35)||(7389386-7389420)
chr7 (1-34)||(8080452-8080485)
chr7 (1-34)||(11044186-11044219)
chr7 (1-34)||(38837215-38837248)
chr7 (1-33)||(36361982-36362014)
chr7 (3-34)||(10343634-10343665)
chr7 (3-38)||(36208167-36208202)
chr7 (3-33)||(36362025-36362055)
chr7 (1-34)||(40957705-40957738)
chr7 (1-33)||(3434561-3434593)
chr7 (1-29)||(3783998-3784026)
[»] chr3 (6 HSPs)
chr3 (1-35)||(11095422-11095456)
chr3 (114-156)||(31697746-31697788)
chr3 (1-35)||(54868964-54868998)
chr3 (1-34)||(49607412-49607445)
chr3 (1-32)||(53982011-53982042)
chr3 (1-33)||(17470404-17470436)
[»] chr6 (4 HSPs)
chr6 (1-34)||(6209534-6209567)
chr6 (1-32)||(17598554-17598585)
chr6 (1-33)||(22422087-22422119)
chr6 (1-29)||(22880727-22880755)
[»] chr4 (10 HSPs)
chr4 (1-34)||(29239884-29239917)
chr4 (1-34)||(42044436-42044469)
chr4 (1-32)||(6034044-6034075)
chr4 (1-32)||(11511531-11511562)
chr4 (1-32)||(41236347-41236378)
chr4 (1-36)||(48183118-48183153)
chr4 (4-34)||(480519-480549)
chr4 (1-34)||(50052497-50052530)
chr4 (1-33)||(29234314-29234346)
chr4 (4-32)||(54473605-54473633)
[»] chr1 (6 HSPs)
chr1 (1-34)||(2581913-2581946)
chr1 (1-34)||(38632390-38632423)
chr1 (1-32)||(9474945-9474976)
chr1 (1-32)||(48716351-48716382)
chr1 (3-32)||(47452391-47452420)
chr1 (1-33)||(50630457-50630489)
[»] chr8 (8 HSPs)
chr8 (1-32)||(504190-504221)
chr8 (1-36)||(14547918-14547953)
chr8 (1-35)||(4854932-4854966)
chr8 (1-31)||(9122196-9122226)
chr8 (3-33)||(44507158-44507188)
chr8 (3-32)||(1180011-1180040)
chr8 (3-32)||(34012367-34012396)
chr8 (4-32)||(12831047-12831075)
[»] chr5 (8 HSPs)
chr5 (1-32)||(35785199-35785230)
chr5 (1-32)||(40145407-40145438)
chr5 (1-31)||(36875672-36875702)
chr5 (1-34)||(13811650-13811683)
chr5 (1-34)||(18520953-18520986)
chr5 (3-32)||(33149709-33149738)
chr5 (5-34)||(36733015-36733044)
chr5 (1-33)||(2740273-2740305)


Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9058511 - 9058476
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactcttat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9058511 tgccacctaagggtgtctatgtatcattactcttat 9058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30915494 - 30915461
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30915494 tgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33436169 - 33436202
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33436169 tgccacctaagggtgtctatgtatcattactctt 33436202  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38882882 - 38882915
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38882882 tgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 10249454 - 10249486
Alignment:
Q  4 cacctaagggtgtctatgtatcattactcttat 36  Q
    |||||||||||||||||||||||||||||||||    
T  10249454 cacctaagggtgtctatgtatcattactcttat 10249486  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 28381724 - 28381755
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  28381724 tgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40701509 - 40701478
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40701509 tgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 32505720 - 32505749
Alignment:
Q  4 cacctaagggtgtctatgtatcattactct 33  Q
    ||||||||||||||||||||||||||||||    
T  32505720 cacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 4060713 - 4060685
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  4060713 cacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5574557 - 5574589
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    ||||||||||| |||||||||||||||||||||    
T  5574557 tgccacctaagagtgtctatgtatcattactct 5574589  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7465804 - 7465836
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  7465804 tgccatctaagggtgtctatgtatcattactct 7465836  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 13438371 - 13438343
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  13438371 cacctaagggtgtctatgtatcattactc 13438343  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19930889 - 19930917
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  19930889 tgccacctaagggtgtctatgtatcatta 19930917  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28863486 - 28863458
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  28863486 tgccacctaagggtgtctatgtatcatta 28863458  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7389420 - 7389386
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  7389420 tgccacctaagggtgtctatgtatcattactctta 7389386  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8080452 - 8080485
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8080452 tgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11044219 - 11044186
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  11044219 tgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38837248 - 38837215
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38837248 tgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36361982 - 36362014
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||||||||||||||||||||||    
T  36361982 tgccacctaagggtgtctatgtatcattactct 36362014  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 10343634 - 10343665
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||    
T  10343634 ccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 36208202 - 36208167
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactcttatgc 38  Q
    ||||||||||||||||||||||||| ||||||||||    
T  36208202 ccacctaagggtgtctatgtatcataactcttatgc 36208167  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 36362055 - 36362025
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||||||||||||||||||||    
T  36362055 ccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40957738 - 40957705
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  40957738 tgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3434593 - 3434561
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  3434593 tgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3784026 - 3783998
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  3784026 tgccacctaagggtgtctatgtatcatta 3783998  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11095422 - 11095456
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11095422 tgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 31697788 - 31697746
Alignment:
Q  114 ttaccctcgctcatagcgttttgttttcagagttgattttctt 156  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  31697788 ttacactcgctcatagcgttttgttctcagagttgattttctt 31697746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 54868964 - 54868998
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  54868964 tgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 49607445 - 49607412
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  49607445 tgccacctaagggtgtctatgtatcattactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 53982042 - 53982011
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  53982042 tgccacctaagggtgtctatgtatcattactc 53982011  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17470436 - 17470404
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||| ||||||||||||||||||||||    
T  17470436 tgccacctaaaggtgtctatgtatcattactct 17470404  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6209534 - 6209567
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6209534 tgccacctaagggtgtctatgtatcattactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 17598585 - 17598554
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  17598585 tgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22422087 - 22422119
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  22422087 tgccacctaaggatgtctatgtatcattactct 22422119  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22880727 - 22880755
Alignment:
Q  1 tgccacctaagggtgtctatgtatcatta 29  Q
    |||||||||||||||||||||||||||||    
T  22880727 tgccacctaagggtgtctatgtatcatta 22880755  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29239917 - 29239884
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29239917 tgccacctaagggtgtctatgtatcattactctt 29239884  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42044436 - 42044469
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42044436 tgccacctaagggtgtctatgtatcattactctt 42044469  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6034075 - 6034044
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  6034075 tgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11511531 - 11511562
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  11511531 tgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41236378 - 41236347
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  41236378 tgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48183118 - 48183153
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactcttat 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  48183118 tgccacgtaagggtgtctatgtatcattactcttat 48183153  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 480519 - 480549
Alignment:
Q  4 cacctaagggtgtctatgtatcattactctt 34  Q
    |||||||||||||||||||||||||||||||    
T  480519 cacctaagggtgtctatgtatcattactctt 480549  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50052497 - 50052530
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    |||||||||||| |||||||||||||||||||||    
T  50052497 tgccacctaaggatgtctatgtatcattactctt 50052530  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29234314 - 29234346
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    ||||| |||||||||||||||||||||||||||    
T  29234314 tgccatctaagggtgtctatgtatcattactct 29234346  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 54473605 - 54473633
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  54473605 cacctaagggtgtctatgtatcattactc 54473633  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2581946 - 2581913
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2581946 tgccacctaagggtgtctatgtatcattactctt 2581913  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38632390 - 38632423
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38632390 tgccacctaagggtgtctatgtatcattactctt 38632423  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9474945 - 9474976
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  9474945 tgccacctaagggtgtctatgtatcattactc 9474976  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48716351 - 48716382
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  48716351 tgccacctaagggtgtctatgtatcattactc 48716382  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 47452391 - 47452420
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  47452391 ccacctaagggtgtctatgtatcattactc 47452420  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50630489 - 50630457
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||| ||||||||||||||||||    
T  50630489 tgccacctaagggtatctatgtatcattactct 50630457  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 504190 - 504221
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  504190 tgccacctaagggtgtctatgtatcattactc 504221  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14547953 - 14547918
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactcttat 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14547953 tgccacctaagggtgtctatgtatctttactcttat 14547918  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4854932 - 4854966
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctta 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  4854932 tgccacctaaggatgtctatgtatcattactctta 4854966  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9122226 - 9122196
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattact 31  Q
    |||||||||||||||||||||||||||||||    
T  9122226 tgccacctaagggtgtctatgtatcattact 9122196  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 44507158 - 44507188
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||||||||||||||||||||||    
T  44507158 ccacctaagggtgtctatgtatcattactct 44507188  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 1180011 - 1180040
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  1180011 ccacctaagggtgtctatgtatcattactc 1180040  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 34012367 - 34012396
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  34012367 ccacctaagggtgtctatgtatcattactc 34012396  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 12831075 - 12831047
Alignment:
Q  4 cacctaagggtgtctatgtatcattactc 32  Q
    |||||||||||||||||||||||||||||    
T  12831075 cacctaagggtgtctatgtatcattactc 12831047  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35785230 - 35785199
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  35785230 tgccacctaagggtgtctatgtatcattactc 35785199  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40145438 - 40145407
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40145438 tgccacctaagggtgtctatgtatcattactc 40145407  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36875672 - 36875702
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattact 31  Q
    |||||||||||||||||||||||||||||||    
T  36875672 tgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13811683 - 13811650
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  13811683 tgccacctaagggtgtctatgtatctttactctt 13811650  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18520953 - 18520986
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  18520953 tgccacctaagggtgtctatgtatcattattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 33149709 - 33149738
Alignment:
Q  3 ccacctaagggtgtctatgtatcattactc 32  Q
    ||||||||||||||||||||||||||||||    
T  33149709 ccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 36733015 - 36733044
Alignment:
Q  5 acctaagggtgtctatgtatcattactctt 34  Q
    ||||||||||||||||||||||||||||||    
T  36733015 acctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2740305 - 2740273
Alignment:
Q  1 tgccacctaagggtgtctatgtatcattactct 33  Q
    |||||||||||| ||||||||||||||||||||    
T  2740305 tgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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