View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17934_low_22 (Length: 226)
Name: NF17934_low_22
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29437676 - 29437886
Alignment:
| Q |
1 |
taaattattcattgcttatattttattgcatagaaactgtcatagactcacattttcagacacaaaactctcaacatccaagctataagaaattcagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29437676 |
taaattattcattgcttatattttattgcatagaacctgtcatagactcacattttcagacacaaaactctcaacatccaagctataagaaattcagaat |
29437775 |
T |
|
| Q |
101 |
tgattctaagccggtgttatcatacatggactaacagaatttgaacaaatcgttattttttgcaatctgtgatttacaacattgatctgagataaactga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
29437776 |
tgattctaagccggtgttatcatatatggactaacagaatttgaacaaatcgttattttttgcaatctgtgattgataacattgatctgagataaactga |
29437875 |
T |
|
| Q |
201 |
cacacaccaca |
211 |
Q |
| |
|
|| |||||||| |
|
|
| T |
29437876 |
caaacaccaca |
29437886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 33751208 - 33751171
Alignment:
| Q |
132 |
taacagaatttgaacaaatcgttattttttgcaatctg |
169 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |
|
|
| T |
33751208 |
taacagaatttgaacaaaccgctattttttgcaatctg |
33751171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 36547731 - 36547759
Alignment:
| Q |
135 |
cagaatttgaacaaatcgttattttttgc |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36547731 |
cagaatttgaacaaatcgttattttttgc |
36547759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University