View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_low_24 (Length: 223)

Name: NF17934_low_24
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_low_24
NF17934_low_24
[»] chr3 (5 HSPs)
chr3 (2-223)||(50916150-50916371)
chr3 (114-219)||(48837982-48838083)
chr3 (115-220)||(50152350-50152451)
chr3 (115-219)||(38044521-38044621)
chr3 (115-215)||(50903982-50904078)
[»] chr7 (9 HSPs)
chr7 (94-219)||(32089265-32089386)
chr7 (114-219)||(41812156-41812257)
chr7 (116-219)||(41706629-41706728)
chr7 (113-219)||(32093022-32093124)
chr7 (117-219)||(32096738-32096836)
chr7 (119-219)||(39128492-39128588)
chr7 (119-219)||(39478457-39478553)
chr7 (112-219)||(32087910-32088013)
chr7 (181-215)||(32089079-32089113)
[»] chr8 (2 HSPs)
chr8 (113-219)||(21634806-21634908)
chr8 (142-219)||(5515537-5515610)
[»] chr6 (2 HSPs)
chr6 (115-219)||(26217234-26217334)
chr6 (119-202)||(7618947-7619026)
[»] chr1 (3 HSPs)
chr1 (117-219)||(31141948-31142046)
chr1 (173-219)||(27402435-27402481)
chr1 (180-215)||(43428940-43428975)
[»] chr2 (1 HSPs)
chr2 (138-216)||(32271347-32271421)
[»] scaffold0856 (1 HSPs)
scaffold0856 (120-213)||(4895-4984)
[»] chr4 (2 HSPs)
chr4 (173-220)||(8762989-8763036)
chr4 (138-172)||(7792742-7792776)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 50916371 - 50916150
Alignment:
Q  2 atgcattgtatacggagtattatgtttgcttgcttgttcgctttaagtcccacatgacctaaatatttcacgttttgagtgtgtgtatagtcatagaaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50916371 atgcattgtatacggagtattatgtttgcttgcttgttcgctttaagtcccacatgacctaaatatttcacgttttgagtgtgtgtatagtcatagaaca 50916272  T
Q  102 ggcaaacaacaaggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcaca 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50916271 ggcaaacaacaaggcttgtccctttgggaacatccgataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcaca 50916172  T
Q  202 aattgagaaatggtccaatctt 223  Q
    ||||||||||||||||||||||    
T  50916171 aattgagaaatggtccaatctt 50916150  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 48837982 - 48838083
Alignment:
Q  114 ggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatg 213  Q
    |||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||    ||||||| |||||||||||||||||||||||| ||||||||    
T  48837982 ggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatgacacgcacaaatcgagaaatg 48838077  T
Q  214 gtccaa 219  Q
    ||||||    
T  48838078 gtccaa 48838083  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 50152350 - 50152451
Alignment:
Q  115 gcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatgg 214  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||    
T  50152350 gcttgtccctttggggacatctgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatgg 50152445  T
Q  215 tccaat 220  Q
    ||||||    
T  50152446 tccaat 50152451  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 38044621 - 38044521
Alignment:
Q  115 gcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatgg 214  Q
    ||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||    
T  38044621 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatgg 38044526  T
Q  215 tccaa 219  Q
    |||||    
T  38044525 tccaa 38044521  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 50903982 - 50904078
Alignment:
Q  115 gcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatgg 214  Q
    ||||||| ||| ||| |||||| ||||||||||||||||| |||||||||| ||    | ||||| |||||||||||||||||||||| | |||||||||    
T  50903982 gcttgtcacttcggggacatccgataaaattggaacgatacagagaagattagc----aaggcccctgcgcaaggatgacacgcacaattcgagaaatgg 50904077  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 32089386 - 32089265
Alignment:
Q  94 atagaacaggcaaacaacaaggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatga 193  Q
    ||||| || |||||| | |||||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||    ||||||| |||||||||||||    
T  32089386 atagagcaagcaaaccataaggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatga 32089291  T
Q  194 cacgcacaaattgagaaatggtccaa 219  Q
    ||||||||||| ||||||||||||||    
T  32089290 cacgcacaaatcgagaaatggtccaa 32089265  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 41812156 - 41812257
Alignment:
Q  114 ggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatg 213  Q
    |||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||    ||||||| |||||||||||||||||||||||| ||||||||    
T  41812156 ggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatgacacgcacaaatcgagaaatg 41812251  T
Q  214 gtccaa 219  Q
    ||||||    
T  41812252 gtccaa 41812257  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 41706728 - 41706629
Alignment:
Q  116 cttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggt 215  Q
    |||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| ||||||||||    
T  41706728 cttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatggt 41706633  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 32093124 - 32093022
Alignment:
Q  113 aggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaat 212  Q
    ||||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||    ||||||| || ||||||||||||||||||||| |||||||    
T  32093124 aggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgtgcaaggatgacacgcacaaatcgagaaat 32093029  T
Q  213 ggtccaa 219  Q
    |||||||    
T  32093028 ggtccaa 32093022  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 32096836 - 32096738
Alignment:
Q  117 ttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggtc 216  Q
    ||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||    
T  32096836 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32096741  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 39128588 - 39128492
Alignment:
Q  119 gtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggtcca 218  Q
    ||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||||    
T  39128588 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 39128493  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 39478457 - 39478553
Alignment:
Q  119 gtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggtcca 218  Q
    ||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||||    
T  39478457 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 39478552  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 32088013 - 32087910
Alignment:
Q  112 aaggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaa 211  Q
    |||||||||||||| ||| |||||  ||||||||||||||||| ||||||||||  |    ||||||| ||| |||||||||||||||||||| ||||||    
T  32088013 aaggcttgtcccttcggggacatctgataaaattggaacgatacagagaagattaac----atggcccctgcacaaggatgacacgcacaaatcgagaaa 32087918  T
Q  212 tggtccaa 219  Q
    ||||||||    
T  32087917 tggtccaa 32087910  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 32089079 - 32089113
Alignment:
Q  181 tgcgcaaggatgacacgcacaaattgagaaatggt 215  Q
    |||||||||||||||||||||||| ||||||||||    
T  32089079 tgcgcaaggatgacacgcacaaatcgagaaatggt 32089113  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 21634908 - 21634806
Alignment:
Q  113 aggcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaat 212  Q
    ||||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||    ||||||| |||||||||||||||||||||||| |||||||    
T  21634908 aggcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatgacacgcacaaatcgagaaat 21634813  T
Q  213 ggtccaa 219  Q
    |||||||    
T  21634812 ggtccaa 21634806  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 5515537 - 5515610
Alignment:
Q  142 aattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggtccaa 219  Q
    ||||||||||||| |||||||||| ||||||    ||||||||||| |||||||||||||||| ||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatgg----cccttgcgcaaagatgacacgcacaaatcgagaaatggtccaa 5515610  T

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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 26217334 - 26217234
Alignment:
Q  115 gcttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatgg 214  Q
    ||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||    
T  26217334 gcttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatgg 26217239  T
Q  215 tccaa 219  Q
    |||||    
T  26217238 tccaa 26217234  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 7619026 - 7618947
Alignment:
Q  119 gtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaa 202  Q
    ||||||| ||| |||||| |||||||||||| |||| |||||||||| |||| |||   || ||||||| ||||||||||||||    
T  7619026 gtcccttcggggacatccgataaaattggaatgatacagagaagattagcat-gat---ccatgcgcaaagatgacacgcacaa 7618947  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 31142046 - 31141948
Alignment:
Q  117 ttgtccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggtc 216  Q
    ||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||    
T  31142046 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatgg----cccctgcgcaaggatgacacgcacaaatcgagaaatggtc 31141951  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 27402481 - 27402435
Alignment:
Q  173 atggcccttgcgcaaggatgacacgcacaaattgagaaatggtccaa 219  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  27402481 atggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaa 27402435  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 43428940 - 43428975
Alignment:
Q  180 ttgcgcaaggatgacacgcacaaattgagaaatggt 215  Q
    ||||||||||||||||| ||||||||||||||||||    
T  43428940 ttgcgcaaggatgacacacacaaattgagaaatggt 43428975  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 32271421 - 32271347
Alignment:
Q  138 ataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatggtc 216  Q
    ||||||||||||||||| | ||||||||  |    ||||||| |||||||||||||||||||||||| |||||||||||    
T  32271421 ataaaattggaacgatacaaagaagattatc----atggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32271347  T

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Target: scaffold0856 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 4984 - 4895
Alignment:
Q  120 tccctttgggaacatccaataaaattggaacgatatagagaagattggcatggatggcccttgcgcaaggatgacacgcacaaattgagaaatg 213  Q
    |||||| ||| |||| | |||||||||||| |||| |||||||||  ||    ||||||| |||||||||||||||||||||||| ||||||||    
T  4984 tcccttcggggacattcgataaaattggaatgatacagagaagatcagc----atggcccatgcgcaaggatgacacgcacaaatcgagaaatg 4895  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 8762989 - 8763036
Alignment:
Q  173 atggcccttgcgcaaggatgacacgcacaaattgagaaatggtccaat 220  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  8762989 atggcccctgcgcaaggatgacacgcacaaatcgagaaatggttcaat 8763036  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 7792776 - 7792742
Alignment:
Q  138 ataaaattggaacgatatagagaagattggcatgg 172  Q
    |||||||||||||||||||||||||||| ||||||    
T  7792776 ataaaattggaacgatatagagaagattagcatgg 7792742  T

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