View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_low_5 (Length: 422)
Name: NF17934_low_5
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 39757586 - 39757189
Alignment:
| Q |
14 |
tgtgtcacttggtcaccattgtttgccatgagttgcagaaattttaccctcttcaggatccatattctcctttctagctatcttcacttctccaccattg |
113 |
Q |
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| T |
39757586 |
tgtgtcacttggccaccattgtttgccatgagttgcagaaattttaccctcttcaggatccatattctcctttctagctatcttcacttctccaccattg |
39757487 |
T |
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| Q |
114 |
ctgatttgagctttaccacttatacgaggcacacatttaagtatactccaaagataatctgtcgcatctctaatatttacgcgactcgtggctaatgaaa |
213 |
Q |
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| T |
39757486 |
ctgatttgagctttaccacttatacgaggcacacatttaagtatactccaaagataatctgtcgcatctctaatatttacgcgactcgtggctaatgaaa |
39757387 |
T |
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| Q |
214 |
tatactgtagataatagaaaagtatgacctgagaaggtgtactactattcaaagattttagttgcgcgcttacgagtttgctattgcggatatcatgcct |
313 |
Q |
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| T |
39757386 |
tataccgtagataatagaaaagtatgacctgagaaggtgtactactattcaaagattttagttgcgcgcttacgagtttgctattgcggatatcatgcct |
39757287 |
T |
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| Q |
314 |
aagctctatgtttccgtcacttgaccaccattgtttcatgctatgagcctcgagaaatttctggttttcctttgagacaacaaacaacttggcttcat |
411 |
Q |
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| T |
39757286 |
aagctctatgtttccgtcacttgaccaccattgtttcatgctatgagcctcgagaaatttctggttttcctttgagacaacaaacaacttggcttcat |
39757189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 109 - 411
Target Start/End: Complemental strand, 39763933 - 39763628
Alignment:
| Q |
109 |
cattgctgatttgagctttaccacttatacga---ggcacacatttaagtatactccaaagataatctgtcgcatctctaatatttacgcgactcgtggc |
205 |
Q |
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| T |
39763933 |
cattgctgatttgagctttaccacttatatgatgaggcacacatttaagtatattccacacataatctgtcgcttctctaatatttatgtgactcgtggt |
39763834 |
T |
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| Q |
206 |
taatgaaatatactgtagataatagaaaagtatgacctgagaaggtgtactactattcaaagattttagttgcgcgcttacgagtttgctattgcggata |
305 |
Q |
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| T |
39763833 |
taatgaaacatattgtgaatagtagaaaagtgctacctcagaaggtgtaccagtgttcaaagatttaagttgcacgctcacaagtttgccattgcggata |
39763734 |
T |
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| Q |
306 |
tcatgcctaagctctatgtttccgtcacttgaccaccattgtttcatgctatgagcctcgagaaatttctggttttcctttgagacaacaaacaacttgg |
405 |
Q |
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| T |
39763733 |
tcatgcttaagctctatgttaccgtcacttgaccaccattgtttcaagccatgagcctcgagaaatttctggtcttcctttgtgataacatacaacttgg |
39763634 |
T |
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| Q |
406 |
cttcat |
411 |
Q |
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|||||| |
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| T |
39763633 |
cttcat |
39763628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 39747228 - 39747161
Alignment:
| Q |
333 |
cttgaccaccattgtttcatgctatgagcctcgagaaatttctggttttcctttgagacaacaaacaa |
400 |
Q |
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|||||||||||||||| || | ||||||||| |||||||| || |||||||| || ||||||||||| |
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| T |
39747228 |
cttgaccaccattgttccaatccatgagcctcaagaaatttttgtttttccttagacacaacaaacaa |
39747161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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