View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_low_7 (Length: 369)
Name: NF17934_low_7
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 7752606 - 7752255
Alignment:
| Q |
18 |
ctatcttgaggttagttaggtaattattcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagag |
117 |
Q |
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| T |
7752606 |
ctattttgaggttagttaggtaattattcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagag |
7752507 |
T |
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| Q |
118 |
aaggattctcctctatacagctttttgggaatactttctgttgttgggcttgtggtatgttatgttgaactaagattgttgaacattgtttttgttccat |
217 |
Q |
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| T |
7752506 |
aaggattctcctctatacagctttttgggaatactttctgttgttgggcttgtggtatgttatgttgaactaaaattgttgaacattgtttttgttccat |
7752407 |
T |
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| Q |
218 |
gtgaattcaagagtttaagtacttatcaattttatcaaatgtttctttttaggctatggtgattggctactctcttggacttggaccaatcccttggctt |
317 |
Q |
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| T |
7752406 |
gtgaattcaagtatttaagtacttatcaattttatcaaatgtttctttttaggctatggtgattggctactctcttggacttggaccaatcccttggctt |
7752307 |
T |
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| Q |
318 |
ataatgtctgaggtaaaatttagactttattttcacttcaccttataaacat |
369 |
Q |
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| T |
7752306 |
ataatgtctgaggtaaaatttagactttattttcacttcaccttataaacat |
7752255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 7823482 - 7823334
Alignment:
| Q |
18 |
ctatcttgaggttagttaggtaattattcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagag |
117 |
Q |
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| T |
7823482 |
ctatcttgacgttatttagctaatcattcgaggttgattctacattagaacctttactatgttaactagttcattgtattgaggttaag--gttacgtac |
7823385 |
T |
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| Q |
118 |
aaggattctcctctatacagctttttgggaatactttctgttgttgggctt |
168 |
Q |
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| T |
7823384 |
gaggattcttctctatacaactttctcggaataatttctgttggtgggctt |
7823334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 32932548 - 32932617
Alignment:
| Q |
263 |
tttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggta |
332 |
Q |
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| T |
32932548 |
ttttaaggttatggtaattgggttctctctaggacttggaccaatcccttggcttataatgtctgaggta |
32932617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 32938477 - 32938546
Alignment:
| Q |
263 |
tttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggta |
332 |
Q |
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| T |
32938477 |
tttttaggctttggtaattggttttgctcttggcattggaccaatcccttggcttataatgtctgaggta |
32938546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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