View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17934_low_8 (Length: 352)

Name: NF17934_low_8
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17934_low_8
NF17934_low_8
[»] chr8 (4 HSPs)
chr8 (13-297)||(31405069-31405343)
chr8 (306-338)||(31370292-31370324)
chr8 (306-338)||(31405425-31405457)
chr8 (13-60)||(31384577-31384624)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 31405069 - 31405343
Alignment:
Q  13 aatattcacagtaaattttaaaatacttaaaagttatttcaagacttttatttttcgactgaaattattcaagatttaaaaaaagatagttaatcttgaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31405069 aatattcacagtaaattttaaaatacttaaaagttatttcaagacttttatttttcaacggaaattattcaagatttaaaaaaagatagttaatcttgaa 31405168  T
Q  113 tnnnnnnnnnnnnnnnnnngatagttaatatatatacacttcgtttgttaaaattgttttgtattgttaacccatcatcgttaaacttatattttatacg 212  Q
    |                  ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31405169 taaaaaaaa----------gatagttaatatatatacacttcatttgttaaaattgttttgtattgtcaacccatcatcgttaaacttatattttatacg 31405258  T
Q  213 tgattcattgaaattgatttcttattttaatatgttcgtaattgccttaacaatccttggacagtaattgccttaacaatccttg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31405259 tgattcattgaaattgatttcttattttaatatgttcgtaattgccttaacaatccttggacagtaattgccttaacaatccttg 31405343  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 31370292 - 31370324
Alignment:
Q  306 ttcaaatctaacatttatatcaaaagcagttac 338  Q
    |||||||||||||||||||||||||||||||||    
T  31370292 ttcaaatctaacatttatatcaaaagcagttac 31370324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 31405425 - 31405457
Alignment:
Q  306 ttcaaatctaacatttatatcaaaagcagttac 338  Q
    |||||||||||||||||||||||||||||||||    
T  31405425 ttcaaatctaacatttatatcaaaagcagttac 31405457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 31384577 - 31384624
Alignment:
Q  13 aatattcacagtaaatttt-aaaatacttaaaagttatttcaagacttt 60  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  31384577 aatattcaca-taaattttcaaaatacttaaaagttatttcaatacttt 31384624  T

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