View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17934_low_9 (Length: 338)
Name: NF17934_low_9
Description: NF17934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17934_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 38498869 - 38498549
Alignment:
| Q |
1 |
agagagaaaattcatcggaatcaggtttaacgatgacggggacggaggcgccgtcggggaaaaagagagtcgcgacggaatctctaggatggctaacaga |
100 |
Q |
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| T |
38498869 |
agagagaaaattcatcggaatcaggtttaacgatgacggggacggaggcgccgtcggggaaaaagagagtcgcgacggaatctctaggatggctaacaga |
38498770 |
T |
|
| Q |
101 |
atcgacgataatgccaaagaagcacagaaccatcgagggtgttggtgcatcttccatcttcgaattgaaagctgaactctacaaatctcaagaagattcc |
200 |
Q |
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| T |
38498769 |
atcgacgataatgccaaagaagcacagaaccatcgagggtgttggtgcatcttccatcttcgaattgaaagctgaactctacaaatctcaagaagattcc |
38498670 |
T |
|
| Q |
201 |
aaaaagtccagagaattatcaggcaccgacgctgaatatcaacgcgccaaaaacatcatcacttccaaaggtccctactccaataagaactccggtgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38498669 |
aaaaagtccagagaattatcaggcaccgacgctgaatatcaacgcgccaaaaacatcatcacttccaaaggtccctactccaataagaactccggtgttg |
38498570 |
T |
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| Q |
301 |
atgcacgcgatctcaagtaat |
321 |
Q |
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||||||||||||||||||||| |
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| T |
38498569 |
atgcacgcgatctcaagtaat |
38498549 |
T |
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