View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17935_high_14 (Length: 262)

Name: NF17935_high_14
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17935_high_14
NF17935_high_14
[»] chr5 (13 HSPs)
chr5 (24-254)||(30622713-30622942)
chr5 (148-254)||(17208074-17208180)
chr5 (148-254)||(32473388-32473494)
chr5 (148-236)||(41334675-41334763)
chr5 (148-236)||(7617133-7617221)
chr5 (148-233)||(38470579-38470664)
chr5 (148-236)||(2614661-2614749)
chr5 (148-236)||(22512305-22512393)
chr5 (150-236)||(5256997-5257083)
chr5 (148-236)||(18033982-18034070)
chr5 (148-236)||(33801469-33801557)
chr5 (148-220)||(33855071-33855143)
chr5 (150-205)||(25915030-25915085)
[»] chr7 (26 HSPs)
chr7 (148-254)||(31513287-31513393)
chr7 (148-254)||(40236919-40237025)
chr7 (149-254)||(31408627-31408732)
chr7 (148-254)||(33384870-33384977)
chr7 (148-254)||(27535225-27535331)
chr7 (150-236)||(10573751-10573837)
chr7 (148-233)||(5194246-5194331)
chr7 (148-236)||(35069721-35069809)
chr7 (150-247)||(4638200-4638297)
chr7 (148-233)||(43317443-43317528)
chr7 (148-236)||(24001024-24001112)
chr7 (148-236)||(42538443-42538531)
chr7 (148-247)||(9216302-9216400)
chr7 (148-247)||(24280597-24280696)
chr7 (148-236)||(41861674-41861764)
chr7 (148-215)||(39998408-39998475)
chr7 (148-247)||(42972852-42972951)
chr7 (150-236)||(43343636-43343722)
chr7 (150-236)||(44326180-44326266)
chr7 (150-236)||(44416946-44417032)
chr7 (151-236)||(26898414-26898499)
chr7 (148-236)||(5015395-5015483)
chr7 (148-236)||(5810936-5811024)
chr7 (148-233)||(45326020-45326105)
chr7 (157-236)||(32029829-32029908)
chr7 (150-236)||(16180369-16180454)
[»] chr3 (24 HSPs)
chr3 (148-254)||(10457886-10457992)
chr3 (148-254)||(25996268-25996374)
chr3 (148-254)||(9434124-9434230)
chr3 (148-254)||(4190259-4190365)
chr3 (148-253)||(52627972-52628077)
chr3 (148-254)||(34791829-34791935)
chr3 (148-254)||(51757593-51757699)
chr3 (148-248)||(42100688-42100788)
chr3 (148-236)||(46941053-46941141)
chr3 (148-236)||(45126940-45127028)
chr3 (148-236)||(40808865-40808953)
chr3 (149-236)||(54237097-54237184)
chr3 (150-247)||(27748565-27748662)
chr3 (148-236)||(24688414-24688502)
chr3 (148-236)||(25413681-25413769)
chr3 (148-236)||(36150130-36150218)
chr3 (148-236)||(47191038-47191125)
chr3 (148-248)||(53273684-53273784)
chr3 (148-236)||(54246160-54246248)
chr3 (149-236)||(40480750-40480837)
chr3 (149-236)||(42394431-42394518)
chr3 (197-247)||(51249357-51249407)
chr3 (152-242)||(29558240-29558330)
chr3 (150-236)||(53581870-53581956)
[»] chr1 (23 HSPs)
chr1 (148-254)||(38335918-38336024)
chr1 (148-254)||(48119628-48119734)
chr1 (148-254)||(35003294-35003400)
chr1 (148-254)||(44112677-44112783)
chr1 (148-254)||(46168383-46168489)
chr1 (148-254)||(38113189-38113295)
chr1 (148-254)||(45639726-45639832)
chr1 (148-254)||(35000107-35000213)
chr1 (148-254)||(41065153-41065259)
chr1 (148-254)||(45427739-45427845)
chr1 (148-254)||(26585462-26585568)
chr1 (148-254)||(45705825-45705931)
chr1 (148-236)||(37814778-37814866)
chr1 (148-236)||(43571098-43571186)
chr1 (148-236)||(23989535-23989624)
chr1 (148-205)||(14427347-14427404)
chr1 (148-236)||(5489776-5489864)
chr1 (150-236)||(2497574-2497660)
chr1 (148-236)||(48498974-48499062)
chr1 (148-236)||(750317-750405)
chr1 (150-236)||(4401329-4401416)
chr1 (195-236)||(4888090-4888131)
chr1 (148-220)||(24769527-24769599)
[»] chr4 (35 HSPs)
chr4 (148-254)||(17619146-17619252)
chr4 (148-254)||(711960-712066)
chr4 (148-254)||(55272370-55272476)
chr4 (150-253)||(3756242-3756344)
chr4 (148-254)||(32728357-32728463)
chr4 (148-254)||(46827700-46827806)
chr4 (150-254)||(35037007-35037111)
chr4 (148-254)||(48435573-48435679)
chr4 (150-254)||(38851515-38851619)
chr4 (148-247)||(28988473-28988572)
chr4 (148-254)||(960864-960970)
chr4 (148-236)||(33703141-33703229)
chr4 (148-228)||(49229684-49229764)
chr4 (148-247)||(1771267-1771366)
chr4 (149-236)||(41878407-41878494)
chr4 (148-236)||(27316725-27316813)
chr4 (148-236)||(27864564-27864652)
chr4 (148-236)||(55966358-55966446)
chr4 (148-235)||(28982835-28982922)
chr4 (150-236)||(27893854-27893940)
chr4 (148-238)||(48463460-48463550)
chr4 (148-236)||(35017733-35017820)
chr4 (148-247)||(41847971-41848070)
chr4 (150-236)||(43949813-43949900)
chr4 (185-254)||(19879991-19880060)
chr4 (148-233)||(25051693-25051778)
chr4 (148-254)||(36004110-36004204)
chr4 (148-236)||(23035980-23036068)
chr4 (148-236)||(27550309-27550397)
chr4 (150-236)||(39631102-39631189)
chr4 (150-236)||(43514698-43514784)
chr4 (150-247)||(41327544-41327641)
chr4 (148-236)||(45490325-45490413)
chr4 (148-233)||(12496956-12497041)
chr4 (198-246)||(56215899-56215947)
[»] chr2 (28 HSPs)
chr2 (148-254)||(12415454-12415560)
chr2 (148-254)||(12427514-12427620)
chr2 (148-254)||(43114557-43114663)
chr2 (148-254)||(966828-966934)
chr2 (148-254)||(18491705-18491811)
chr2 (150-254)||(11825648-11825752)
chr2 (150-254)||(41281968-41282072)
chr2 (148-254)||(16803968-16804074)
chr2 (148-254)||(16843250-16843356)
chr2 (150-254)||(4299414-4299518)
chr2 (148-254)||(34895735-34895841)
chr2 (172-254)||(4451944-4452026)
chr2 (149-247)||(34817777-34817875)
chr2 (148-236)||(30838632-30838720)
chr2 (148-254)||(14285676-14285782)
chr2 (150-233)||(6518484-6518566)
chr2 (148-247)||(13780736-13780835)
chr2 (148-236)||(1750414-1750502)
chr2 (148-236)||(4764738-4764826)
chr2 (148-236)||(16096747-16096835)
chr2 (148-236)||(12302265-12302353)
chr2 (166-254)||(12531657-12531744)
chr2 (149-236)||(19047158-19047245)
chr2 (148-234)||(43335777-43335863)
chr2 (150-220)||(33229303-33229374)
chr2 (150-236)||(43490413-43490499)
chr2 (150-233)||(8896598-8896681)
chr2 (148-234)||(42026767-42026855)
[»] chr8 (28 HSPs)
chr8 (148-254)||(35181516-35181622)
chr8 (148-254)||(16603620-16603726)
chr8 (148-254)||(34304788-34304894)
chr8 (149-254)||(16358827-16358933)
chr8 (148-254)||(18066712-18066818)
chr8 (150-254)||(33629987-33630091)
chr8 (148-234)||(1375542-1375628)
chr8 (150-236)||(42295197-42295283)
chr8 (148-254)||(19386559-19386670)
chr8 (148-236)||(11582766-11582854)
chr8 (148-236)||(29705362-29705450)
chr8 (148-236)||(36743495-36743583)
chr8 (150-236)||(29800962-29801048)
chr8 (148-254)||(10678146-10678240)
chr8 (148-236)||(2165975-2166063)
chr8 (150-236)||(20148762-20148848)
chr8 (150-236)||(26125637-26125723)
chr8 (150-236)||(42699259-42699345)
chr8 (150-235)||(30912575-30912660)
chr8 (148-236)||(5754903-5754991)
chr8 (148-236)||(30660754-30660842)
chr8 (156-236)||(31384672-31384752)
chr8 (148-236)||(42197447-42197535)
chr8 (149-236)||(45397317-45397404)
chr8 (148-236)||(2546996-2547084)
chr8 (148-247)||(40528635-40528735)
chr8 (198-247)||(32328818-32328867)
chr8 (148-184)||(28977146-28977182)
[»] chr6 (18 HSPs)
chr6 (148-254)||(33242403-33242509)
chr6 (150-254)||(27441544-27441648)
chr6 (148-247)||(3213400-3213499)
chr6 (148-248)||(33253913-33254013)
chr6 (148-254)||(31109216-31109322)
chr6 (148-233)||(7273350-7273435)
chr6 (148-236)||(26670021-26670109)
chr6 (148-236)||(13743233-13743321)
chr6 (148-236)||(13748733-13748821)
chr6 (148-236)||(21293689-21293777)
chr6 (150-236)||(24203999-24204085)
chr6 (148-236)||(7292747-7292835)
chr6 (148-236)||(7367549-7367637)
chr6 (148-236)||(9698345-9698433)
chr6 (148-236)||(26466799-26466887)
chr6 (148-247)||(30014343-30014442)
chr6 (148-236)||(21279929-21280017)
chr6 (150-233)||(30735984-30736067)
[»] scaffold0003 (1 HSPs)
scaffold0003 (150-254)||(45713-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (148-254)||(35450-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (148-236)||(685-773)
[»] scaffold0385 (1 HSPs)
scaffold0385 (148-236)||(11251-11339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (149-236)||(112656-112743)
[»] scaffold0187 (2 HSPs)
scaffold0187 (148-236)||(14200-14288)
scaffold0187 (148-236)||(24528-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (148-233)||(23436-23521)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 30622942 - 30622713
Alignment:
Q  24 agctactcgtactctttcattttcttgacaactcaacatgttgtccactctgtccaggaaaacaacaatatatgtacttgtattgtatttcagtgacaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30622942 agctactcgtactctttcattttcttgacaactcaacatgttgtccactctgtccaggaaaacaacaatatatgtacttgtattgtatttcagtgacaaa 30622843  T
Q  124 tatatagttttgttagnnnnnnnnggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatt 223  Q
     | |||||||||||||        ||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  30622842 cacatagttttgttagaaaaaaaaggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatt 30622744  T
Q  224 tatctcacaaccatattttctctttcatctc 254  Q
    ||||||||||||||| |||||||||||||||    
T  30622743 tatctcacaaccatactttctctttcatctc 30622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 17208074 - 17208180
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctt 17208173  T
Q  248 tcatctc 254  Q
    |||||||    
T  17208174 tcatctc 17208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 32473494 - 32473388
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctt 32473395  T
Q  248 tcatctc 254  Q
    |||||||    
T  32473394 tcatctc 32473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 41334763 - 41334675
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |||||||||| ||| || |||| ||| |||| |||||||||||||| || ||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaacca 41334675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 7617133 - 7617221
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| ||||||||   ||| || |||||||| |||| |||||||||||||| || ||||||||||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaacca 7617221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 38470579 - 38470664
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    |||||||||||||| ||||||||||| |||||||    |||||| |||||||| |||||||||||||||||||||| || ||||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaa 38470664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 2614749 - 2614661
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 2614661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 22512305 - 22512393
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||||   |||||| || ||||| |||| |||||||||||||| || ||||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaacca 22512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 5256997 - 5257083
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| |||||| |||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaacca 5257083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 18033982 - 18034070
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||||   |||||| |||| ||| |||| ||||||||| |||| || ||||||||||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 18034070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 33801469 - 33801557
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||| |||||| |  ||||||  |||||| || ||||| |||| ||||||||| |||| || ||||||||||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaacca 33801557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaa 220  Q
    |||||||||||||||||||||||||| || ||||||  |||||| |||||||| |||| | | ||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 25915085 - 25915030
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcatta 205  Q
    |||||||||||||||||||||||| || ||||||| |||||| |||| ||| ||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtatta 25915030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 31513287 - 31513393
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 31513386  T
Q  248 tcatctc 254  Q
    |||||||    
T  31513387 tcatctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 40236919 - 40237025
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||| |||||||||| || |||||||||||||||||||||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctt 40237018  T
Q  248 tcatctc 254  Q
    |||||||    
T  40237019 tcatctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 31408732 - 31408627
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctcttt 248  Q
    ||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctcttt 31408633  T
Q  249 catctc 254  Q
    ||||||    
T  31408632 catctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 33384870 - 33384977
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacacct-tattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctct 246  Q
    ||||||||||||||||||| | ||||||||||||||  |||||||||| |||||||||| ||| ||||||||||||| ||||||||| |||| |||||||    
T  33384870 ggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctct 33384969  T
Q  247 ttcatctc 254  Q
    ||||||||    
T  33384970 ttcatctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 27535331 - 27535225
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||  ||||||| || |||||  |||| || |||||||||| || |||||||||| ||| ||||||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctt 27535232  T
Q  248 tcatctc 254  Q
    |||||||    
T  27535231 tcatctc 27535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 10573751 - 10573837
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| ||||||||||| ||||||| | ||||||| |||||||| |||| | ||||||||||||||| ||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaacca 10573837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 5194331 - 5194246
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| |||| |||  |||||||||||||| |||||| |||||||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaa 5194246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 35069721 - 35069809
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||| ||||| || ||||||| |||||| ||| |||| |||| |||||||||||||| || ||||||||||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 35069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 4638297 - 4638200
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||| |||| ||||||||   |||||| |||||||  |||| |||||||||||||| || |||||||||||||| ||| ||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 43317443 - 43317528
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| | || |||| ||| |||||||||| |||||| |||||||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaa 43317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 24001112 - 24001024
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 24001024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 42538531 - 42538443
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 42538443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 9216302 - 9216400
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||| || || | | ||||||| |||| ||||||||  ||||||||||||| || |||||||||||| ||||| ||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtacaccc-atgcattagagatattttggtaagttcatctcacaaccacattttatctt 9216400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 24280696 - 24280597
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||| ||||||||||||| ||||||||| |||| || | |||||||| ||   ||||||||||||||| ||||||||| || | ||||||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctctt 24280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 41861674 - 41861764
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcatta-ag-gatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |||||||||  ||| || |||| ||| |||| || ||||||||||||| |||||||||||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaacca 41861764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatatttt 215  Q
    ||||||||||||||||||||  |||||||||||| | ||||||| |||||||| |||| |||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 42972852 - 42972951
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||| |||||| |||||| || |||||   |||||| ||| |||| |||| |||||||||||||| || |||||||||||| ||||| ||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42972951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 43343722 - 43343636
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||| | |||| |  |||||| ||||||| |||||||| |||| |||||||||| ||| || ||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaacca 43343636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 44326180 - 44326266
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| ||||||||||| ||||||| |  |||||| ||| |||  |||| |||||||||||||| || ||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaacca 44326266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 44417032 - 44416946
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||| | |||| |  |||||| ||||||| |||||||| |||| |||||||||| ||| || ||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaacca 44416946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 26898499 - 26898414
Alignment:
Q  151 aaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||| |||| |||||||||  |||||| |  ||||| |||| |||||||||||||| || |||| |||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaacca 26898414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 5015395 - 5015483
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||| ||||| |  |||||   |||||| ||| |||| |||| |||||||||||||| || ||||||||||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 5015483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 5811024 - 5810936
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||| ||||||||| || ||||||  |||||| |||| ||  |||| |||||||||| ||| || ||||||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaacca 5810936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 45326020 - 45326105
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||| |||||||| |||||| |||| ||||||| |  |||||| |||||||  |||| |||||||||||||| || |||||||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaa 45326105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 32029908 - 32029829
Alignment:
Q  157 tacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||| |||||  |||| || ||||||  |||||| |||||||| |||| ||||||||||||||||| |||| |||||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaacca 32029829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 16180454 - 16180369
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| |||||| |||| || ||||||  |||||| |||||| | ||||   ||||||||||||||| ||||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaacca 16180369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 10457992 - 10457886
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 10457893  T
Q  248 tcatctc 254  Q
    |||||||    
T  10457892 tcatctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 25996268 - 25996374
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||  |||||||| ||||||||||||| |||||||||||||||||||||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctctt 25996367  T
Q  248 tcatctc 254  Q
    |||||||    
T  25996368 tcatctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 9434124 - 9434230
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 9434223  T
Q  248 tcatctc 254  Q
    |||||||    
T  9434224 tcatctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 4190365 - 4190259
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||  ||| ||||  |||||||||||||||| |||||||||||||| ||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctt 4190266  T
Q  248 tcatctc 254  Q
    |||||||    
T  4190265 tcatctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 52628077 - 52627972
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||| ||||||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||||||| |||| ||||||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctt 52627978  T
Q  248 tcatct 253  Q
    ||||||    
T  52627977 tcatct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 34791829 - 34791935
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||| |||||  ||| || |||||||||||||| ||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctt 34791928  T
Q  248 tcatctc 254  Q
    |||||||    
T  34791929 tcatctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 51757593 - 51757699
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||| ||| ||||| |||| || |||||||||||||| ||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctt 51757692  T
Q  248 tcatctc 254  Q
    |||||||    
T  51757693 tcatctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 42100688 - 42100788
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||| || ||||||| |||||| |||||||| |||| |||||||||||||| || |||||||||||| ||||| ||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42100787  T
Q  248 t 248  Q
    |    
T  42100788 t 42100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 46941053 - 46941141
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| || |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 46941141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 45127028 - 45126940
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| ||||||||||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 45126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 40808865 - 40808953
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| |||||| |||| || ||||||  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 40808953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 54237097 - 54237184
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 54237184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 27748565 - 27748662
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||| |||| |||||||||| ||| || |||  ||| |||| |||||||||||||| || |||||||||| ||| ||| ||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatctt 27748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 24688502 - 24688414
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  |||||   |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 24688414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 25413681 - 25413769
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||  |||||| |||  ||| |||| ||||||||| |||| || ||||||||||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaacca 25413769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 36150130 - 36150218
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||| |||||||| |||||||||  ||| || |||| ||| || | |||||||||||||| || ||||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaacca 36150218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 47191125 - 47191038
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||| |||||| | |||||| ||||  ||||||||| ||| || ||||||||||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcacaacca 47191038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 53273784 - 53273684
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||| ||||||| | |||| || || |||| |||||| | |||||| |||| |||||||||||||| || |||||||||||||| ||| ||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatctt 53273685  T
Q  248 t 248  Q
    |    
T  53273684 t 53273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 54246248 - 54246160
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||  |||||| |||| ||| ||||  |||||||| |||| || ||||||||||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaacca 54246160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 40480750 - 40480837
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||||||| |||||  ||  |||||| | || ||| |||| |||||||||||||| || ||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaacca 40480837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 42394518 - 42394431
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||||||| || ||||    |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 42394431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 51249357 - 51249407
Alignment:
Q  197 catgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 29558330 - 29558240
Alignment:
Q  152 aatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatatttt 242  Q
    ||||||| |||||||||||||| ||||||| || |||||| |||| ||  |||| | |||| |||||||||| ||||||||| || |||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcacaatcacatttt 29558240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 53581956 - 53581870
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||| ||||| ||||||||   |||||| | || ||| |||| |||||||||| ||| || ||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaacca 53581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 38335918 - 38336024
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 38336017  T
Q  248 tcatctc 254  Q
    |||||||    
T  38336018 tcatctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 48119628 - 48119734
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 48119727  T
Q  248 tcatctc 254  Q
    |||||||    
T  48119728 tcatctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 35003294 - 35003400
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctt 35003393  T
Q  248 tcatctc 254  Q
    |||||||    
T  35003394 tcatctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 44112677 - 44112783
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 44112776  T
Q  248 tcatctc 254  Q
    |||||||    
T  44112777 tcatctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 46168383 - 46168489
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||| | | ||||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T
Q  248 tcatctc 254  Q
    |||||||    
T  46168483 tcatctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 38113295 - 38113189
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||| |||||||||||||| || |||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactctt 38113196  T
Q  248 tcatctc 254  Q
    |||||||    
T  38113195 tcatctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 45639832 - 45639726
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||| ||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctt 45639733  T
Q  248 tcatctc 254  Q
    |||||||    
T  45639732 tcatctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 35000213 - 35000107
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||  |||| |||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctt 35000114  T
Q  248 tcatctc 254  Q
    |||||||    
T  35000113 tcatctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 41065153 - 41065259
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||  |||||||||| || |||||||||||||| ||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctt 41065252  T
Q  248 tcatctc 254  Q
    || ||||    
T  41065253 tcctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 45427845 - 45427739
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||| || |||||||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 45427746  T
Q  248 tcatctc 254  Q
    |||||||    
T  45427745 tcatctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 26585462 - 26585568
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||| |||||||  ||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||||    
T  26585462 ggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctt 26585561  T
Q  248 tcatctc 254  Q
    |||||||    
T  26585562 tcatctc 26585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 45705825 - 45705931
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||| ||||||||||||||||||||||   ||||||| || |||||||||| ||| |||||| |||||| |||||||||||||| ||||||||    
T  45705825 ggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 45705924  T
Q  248 tcatctc 254  Q
    |||||||    
T  45705925 tcatctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 37814778 - 37814866
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| ||||||||||| ||||||| || |||||| |||||||| |||||||||||||||||||||| || |||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaacca 37814866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 43571186 - 43571098
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||| |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 43571098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 23989624 - 23989535
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaat-catacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||||||| || |||||||   ||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaacca 23989535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 14427347 - 14427404
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcatta 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 5489776 - 5489864
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 5489864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 2497660 - 2497574
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| |||||| |||| |||||||    |||||| |||||||  ||||||||||||||||||| || ||||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaacca 2497574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 48499062 - 48498974
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||| ||||| |  |||||   |||||| ||| |||| |||| |||||||||||||| || ||||||||||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 48498974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 750405 - 750317
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| |||||||||||   || ||||||  |||||| |||||||| || | |||||||||| |||||| |||||| |||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaacca 750317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 4401329 - 4401416
Alignment:
Q  150 aaaatgttacatgaacaccctttaat-catacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||| ||||||||||| |||| || | ||||| | |||||| |||||||| ||||  ||||||||||||| || ||||||||||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaacca 4401416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 4888090 - 4888131
Alignment:
Q  195 cccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  4888090 cccatgtattagggatattttggtaagtttatctcacaacca 4888131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 24769599 - 24769527
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaa 220  Q
    |||||||||| |||||||||| |||| |  |||||   |||||| |||||||| |||| ||||||||||||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaa 24769527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 17619252 - 17619146
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 17619153  T
Q  248 tcatctc 254  Q
    |||||||    
T  17619152 tcatctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 711960 - 712066
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctt 712059  T
Q  248 tcatctc 254  Q
    |||||||    
T  712060 tcatctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 55272476 - 55272370
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 55272377  T
Q  248 tcatctc 254  Q
    |||||||    
T  55272376 tcatctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 3756344 - 3756242
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctttc 3756246  T
Q  250 atct 253  Q
    ||||    
T  3756245 atct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 32728357 - 32728463
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||| ||||||||| |||| ||||||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctt 32728456  T
Q  248 tcatctc 254  Q
    |||||||    
T  32728457 tcatctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 46827806 - 46827700
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||| |||||||||| |  |||||||||||||||||||||| |||||||||||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctt 46827707  T
Q  248 tcatctc 254  Q
    |||||||    
T  46827706 tcatctc 46827700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 35037007 - 35037111
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    |||||||||||||| |||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttc 35037106  T
Q  250 atctc 254  Q
     ||||    
T  35037107 ttctc 35037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 48435679 - 48435573
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||| ||||||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||| || |||||||||| ||||||||| |||| ||| ||||    
T  48435679 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 48435580  T
Q  248 tcatctc 254  Q
    |||||||    
T  48435579 tcatctc 48435573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 38851515 - 38851619
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    ||||||||||||||| | |||||||||||||| | || |||| || |||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 38851614  T
Q  250 atctc 254  Q
    |||||    
T  38851615 atctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 28988473 - 28988572
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||||||||| || ||| |||||| |||||| |||||| ||||| | ||||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 960970 - 960864
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||| || ||||| ||| ||||||||||||| |||| | || | || ||||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctctt 960871  T
Q  248 tcatctc 254  Q
    |||||||    
T  960870 tcatctc 960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 33703141 - 33703229
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  |||| ||||||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 33703229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 49229764 - 49229684
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatct 228  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||| ||  ||||||||||||||||| ||||||||| ||||    
T  49229764 ggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 1771366 - 1771267
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||| || ||||||  |||||| |||||||| ||||  ||||||||| ||| || |||||||||||| ||||| ||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaaccacattttatctt 1771267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 41878407 - 41878494
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||| ||||| |||||||||| |||||| |||| || ||||| |||||||||| ||| || ||||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaacca 41878494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 27316813 - 27316725
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||| | |||||||||||| || ||||||| ||| || |||||||| ||||||||||||||||||| || |||||| |||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataacca 27316725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 27864564 - 27864652
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| |||||| |||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 27864652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 55966446 - 55966358
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| ||||||||||| ||||||| |  |||||| | |||||| |||| |||||||||||||| || ||||||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 28982922 - 28982835
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacc 235  Q
    |||||||||||||||||||||||||| |  |||||| ||||||| | |||||  |||| |||||||||||||| || |||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 27893940 - 27893854
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| |||||| |||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaacca 27893854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 48463550 - 48463460
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccata 238  Q
    |||||||||||||| |||||| |||| |||||||  | |||||| | |||||| |||| |||||||||||||| || ||||||||||||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccata 48463460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 35017733 - 35017820
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || || | || |||||| |||||||| | || |||||||||||||| || ||||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcacaacca 35017820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 41847971 - 41848070
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||| ||||| |||||  ||| |||||| |||||| |||||||||||||  || ||||||| ||||| ||| |||||||| | ||||||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 43949900 - 43949813
Alignment:
Q  150 aaaatgttacatgaacaccctttaat-catacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||| |||||||||||||||| || | | ||||| |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 43949813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 19879991 - 19880060
Alignment:
Q  185 tattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttcatctc 254  Q
    ||||||| |||||||  |||| ||| ||||||||||||| ||||||||| |||| |||||||||||||||    
T  19879991 tattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctc 19880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 25051693 - 25051778
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||| |||||||||| ||||| || ||||||  |||||| |||| ||| |||| |||||||||||||| || |||||||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaa 25051778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 36004204 - 36004110
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||| |||||||||||||||            |||||||  |||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  36004204 ggaaaatgttacatgaataccctttaatcatac------------accccatatattagggacattttgataaatttatctcacaaccatactttctctt 36004117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 23035980 - 23036068
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||  |||||| || |||||| ||||||| |||| ||  |||| ||||||||| |||| || ||||||||||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaacca 23036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 27550309 - 27550397
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  |||||   |||||| ||| |||| |||| |||||||||||||| || |||| |||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaacca 27550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 39631102 - 39631189
Alignment:
Q  150 aaaatgttacatgaacaccctttaat-catacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||| ||||||||| |||||| || | ||||||| |||||| ||| |||| |||| |||||||||||||| || ||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 39631189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 43514784 - 43514698
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||| || |||||   |||||| ||  |||| |||| || ||||||||||| || ||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 41327641 - 41327544
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||  |||||||||| ||| |||||  |||||| |||  ||||| || ||| ||||||||||||| |||||||| ||| | ||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 45490413 - 45490325
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||  |||| | ||||| |  |||||| ||| |||| |||| ||||| ||| ||||||| ||||||||||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaacca 45490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 12496956 - 12497041
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||||| |||||||||||||| || |||||   |||||| | |||||| ||||  ||||||||||||| || |||| ||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaa 12497041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 56215947 - 56215899
Alignment:
Q  198 atgcattaaggatattttggtaaatttatctcacaaccatattttctct 246  Q
    ||||||||  |||||||||| |||||||||||||||||| | |||||||    
T  56215947 atgcattagcgatattttggaaaatttatctcacaaccacactttctct 56215899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 12415560 - 12415454
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12415461  T
Q  248 tcatctc 254  Q
    |||||||    
T  12415460 tcatctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 12427620 - 12427514
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12427521  T
Q  248 tcatctc 254  Q
    |||||||    
T  12427520 tcatctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 43114557 - 43114663
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 43114656  T
Q  248 tcatctc 254  Q
    |||||||    
T  43114657 tcatctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 966934 - 966828
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |  |||||||||||| ||||||||| |||| ||||||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctt 966835  T
Q  248 tcatctc 254  Q
    |||||||    
T  966834 tcatctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 18491705 - 18491811
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||||| |||||||||||||| || |||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctt 18491804  T
Q  248 tcatctc 254  Q
    |||||||    
T  18491805 tcatctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 11825752 - 11825648
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| || ||||||||| |||| ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttc 11825653  T
Q  250 atctc 254  Q
    |||||    
T  11825652 atctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 41282072 - 41281968
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||| ||| || |||||||||||||| ||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 41281973  T
Q  250 atctc 254  Q
    |||||    
T  41281972 atctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 16803968 - 16804074
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||| ||| || |||||||||||||| ||||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16804067  T
Q  248 tcatctc 254  Q
    |||||||    
T  16804068 tcatctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 16843250 - 16843356
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||| ||| || |||||||||||||| ||||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16843349  T
Q  248 tcatctc 254  Q
    |||||||    
T  16843350 tcatctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 4299518 - 4299414
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    ||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||| || ||||||||||||| ||||||||| |||| || ||||||     
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactcttta 4299419  T
Q  250 atctc 254  Q
    |||||    
T  4299418 atctc 4299414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 34895841 - 34895735
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||| ||||||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||| || |||||||||| ||||||||| |||| ||| ||||    
T  34895841 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 34895742  T
Q  248 tcatctc 254  Q
    |||||||    
T  34895741 tcatctc 34895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 4452026 - 4451944
Alignment:
Q  172 taatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttcatctc 254  Q
    |||||||||| ||||||||| |||  |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||||||| ||| |||||| |||||| |||||||||| || | | ||||||||||||| |||||||||||| | ||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 30838632 - 30838720
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  |||| ||||||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 30838720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 14285676 - 14285782
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||| |||||  ||||||||||||||||||||| ||||||| |||| ||  ||||| |||||||||||||||| |||||| |  |||| ||||||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctctt 14285775  T
Q  248 tcatctc 254  Q
    |||||||    
T  14285776 tcatctc 14285782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||| ||| |||||||||| || |||||||||    
T  6518566 aaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 13780835 - 13780736
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||| |||||  |||| ||| |||||| |||||| ||||||| ||||| |||||||||| |||||| |||||||||||| | ||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctctt 13780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 1750414 - 1750502
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||  |||||| |||| ||| |||| ||||||||| |||| || ||||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 1750502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 4764826 - 4764738
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| |||||| |||| || |||||| ||||||| |||||||| ||||   ||||||||||||||| ||||||||||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaacca 4764738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 16096747 - 16096835
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||  ||| || |||||||| |||| |||||||||||| | || ||||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaacca 16096835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 12302353 - 12302265
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  ||||||  |||||| |||| ||| |||| ||||||||| |||| || ||||||||||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaacca 12302265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 12531744 - 12531657
Alignment:
Q  166 accctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttcatctc 254  Q
    ||||||||||||||||||  |||||| ||| || |||||| ||   |||||||||||| |||||||||||||| |||||||||||||||    
T  12531744 accctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctc 12531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 19047158 - 19047245
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||||||| || ||||    |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 19047245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 43335863 - 43335777
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaac 234  Q
    ||||||||||| ||||||| | |||| || ||||||| |||||| | |||||| |||| |||||||||||||| || ||||||||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 43335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 33229303 - 33229374
Alignment:
Q  150 aaaatgttacatgaacaccctttaat-catacaccttattgtataccccatgcattaaggatattttggtaa 220  Q
    |||||| |||||||||||||||| || | ||||||| |||||| |||||||| |||| ||||||||||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaa 33229374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 43490499 - 43490413
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||| || |||| |  |||||| || | ||| |||| |||||||||||||| || |||||| |||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataacca 43490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 8896681 - 8896598
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    |||||||||||||||||||||||| ||| |||    |||||| |||| || || || | ||||||||||||||| |||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaa 8896598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 42026767 - 42026855
Alignment:
Q  148 ggaaaatgttacatgaacaccc--tttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaac 234  Q
    ||||||||||||||||||||||  |||| |||||||    |||||| | |||  |||||| ||||||||||| ||||| ||||||||||    
T  42026767 ggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaac 42026855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 35181516 - 35181622
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 35181615  T
Q  248 tcatctc 254  Q
    |||||||    
T  35181616 tcatctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 16603726 - 16603620
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||| |||||||||||||| || |||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctt 16603627  T
Q  248 tcatctc 254  Q
    |||||||    
T  16603626 tcatctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 34304788 - 34304894
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| || |||||||||||||| ||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 34304887  T
Q  248 tcatctc 254  Q
    |||||||    
T  34304888 tcatctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 16358933 - 16358827
Alignment:
Q  149 gaaaatgttacat-gaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||| | ||||||||||||| |||||||| |||||| |||||||||||||| ||||| ||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttctttt 16358834  T
Q  248 tcatctc 254  Q
    |||||||    
T  16358833 tcatctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 18066818 - 18066712
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||||||||||||||||   ||||||| | |||||| |||| ||||||||| |||| || |||||||||||||| ||||||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 18066719  T
Q  248 tcatctc 254  Q
    |||||||    
T  18066718 tcatctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 33630091 - 33629987
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||| ||| ||||| |||| || |||||||||| ||| ||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctttc 33629992  T
Q  250 atctc 254  Q
    |||||    
T  33629991 atctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 1375542 - 1375628
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaac 234  Q
    ||||||| ||||||||||||| |||| |||||||||  |||||| |||||||  |||| ||||||||||||||||||||||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaac 1375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 42295197 - 42295283
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||| || ||||||| |||||| || ||||| |||| |||||||||||||| || ||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaacca 42295283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 19386670 - 19386559
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgta--taccc---catgcattaaggatattttggtaaatttatctcacaaccatatttt 242  Q
    |||||||||||||||||||||||||||||||||||| |||| ||  | | |   ||||||||||| || ||||| |||||| |||||||||| ||| |||    
T  19386670 ggaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactatacttt 19386571  T
Q  243 ctctttcatctc 254  Q
    ||||||||||||    
T  19386570 ctctttcatctc 19386559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 11582766 - 11582854
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 11582854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 29705362 - 29705450
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  ||||||  |||||| |||||||| |||| |||||||||| ||| || ||||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaacca 29705450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 36743583 - 36743495
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 36743495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 29801048 - 29800962
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| |||||| |||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 29800962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 10678240 - 10678146
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||| |||||||||||||||            |||||||  |||||||| ||||||||||||| |||||||||||||| ||||||||    
T  10678240 ggaaaatgttacatgaataccctttaatcatac------------accccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 10678153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 2166063 - 2165975
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||| ||||||||||||| |||| || ||||||  ||||||||||||||| ||||  ||||||||||||| || |||||| |||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataacca 2165975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 20148762 - 20148848
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| ||||||||||| ||||||| |  |||||| ||| |||  |||| |||||||||||||| || ||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaacca 20148848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 26125637 - 26125723
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||| ||||||||||| |||||||    |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 26125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 42699259 - 42699345
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||| || ||||||  |||||| |||  ||| |||| ||||||||| |||| || ||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaacca 42699345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 30912660 - 30912575
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacc 235  Q
    |||||||||||||||||||||||| || ||||||  |||||| ||  |||| |||| || ||||||||||| || |||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 5754903 - 5754991
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||| |||| || |||| |  |||||| | |||||  |||| |||||||||||||| || ||||||||||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaacca 5754991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 30660842 - 30660754
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  |||| |  |||||| |||| ||| |||| |||||||||||||| || |||| |||||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaacca 30660754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 31384672 - 31384752
Alignment:
Q  156 ttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||| || ||||   ||||||| |||||||| |||| | |||||||||||| || ||||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaacca 31384752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 42197535 - 42197447
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||| |||| || ||||||  |||| | || | ||| |||| |||||||||||||| || ||||||||||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaacca 42197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 45397317 - 45397404
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||| ||||||||||||| || ||||||  ||| || |||| ||| |||| ||||||||| |||| || ||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaacca 45397404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 2546996 - 2547084
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||| ||||| |  |||||   |||||| ||| |||| |||| ||||||||| |||| || ||||||||||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaacca 2547084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 40528735 - 40528635
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaat-catacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctct 246  Q
    |||||||  |||||||||||||||| || || | |||  |||||| |||||||  |||| ||| |||||| ||||||||||||||||||| | |||||||    
T  40528735 ggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaaccacactttctct 40528636  T
Q  247 t 247  Q
    |    
T  40528635 t 40528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 32328867 - 32328818
Alignment:
Q  198 atgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||| | |||||||||||| ||||||||||||| ||| ||||||||    
T  32328867 atgcattaggaatattttggtaagtttatctcacaactatactttctctt 32328818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 28977146 - 28977182
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacacct 184  Q
    |||||||||||||||||||||||||| || |||||||    
T  28977146 ggaaaatgttacatgaacaccctttattcctacacct 28977182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 33242403 - 33242509
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||| |||| ||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctt 33242502  T
Q  248 tcatctc 254  Q
    |||||||    
T  33242503 tcatctc 33242509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 27441544 - 27441648
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||| | || ||| |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 27441643  T
Q  250 atctc 254  Q
    |||||    
T  27441644 atctc 27441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 3213400 - 3213499
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||| ||||||||||| ||||||| || |||||| |||||||| |||||||||||||||||||||| || ||||||||||| ||| ||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatctt 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 33253913 - 33254013
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||| || |||||||||| ||||||||| |||| ||| ||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 33254012  T
Q  248 t 248  Q
    |    
T  33254013 t 33254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 31109322 - 31109216
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||||||||||| |  ||| || |||||||||| || |||||||||| |||||| | || || |||| ||||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctctt 31109223  T
Q  248 tcatctc 254  Q
    |||||||    
T  31109222 tcatctc 31109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 7273435 - 7273350
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||  ||||||||||||| || |||||||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaa 7273350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 26670109 - 26670021
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||| |||||| ||| |||| |||| |||||||||||||| || ||||||||||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 26670021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 13743321 - 13743233
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||| |||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 13743233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 13748821 - 13748733
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||| |||| ||||||| |  |||||| |||||||| |||| |||||||||||||| || ||||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 13748733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 21293777 - 21293689
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| ||||||||||| |||||||  | | |||| |||||||| |||||||||||||||||||||| || |||||||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaacca 21293689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 24204085 - 24203999
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||| |||| || |||||| ||||||| || ||||| |||| |||||||||||||| || ||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaacca 24203999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 7292747 - 7292835
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||| ||||||| |||| |||||||||| ||| || |||| ||| |||| |||||||||||||| || ||||||||||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaacca 7292835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 7367549 - 7367637
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||| ||||||| | |||| |||||||||| |||||| | |||||| |||| |||||||||||||| || ||||||||||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 7367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 9698433 - 9698345
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || |||| |  |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 9698345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 26466799 - 26466887
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||| ||||||||||| || ||||||  |||||| || ||||| |||| || ||||||||||| || ||||||||||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaacca 26466887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 30014343 - 30014442
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||||||||||||||| || |||| |  ||| || | |||||| |||| | |||||||||||| || |||||||||||||| ||| ||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatctt 30014442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 21279929 - 21280017
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  ||||    |||| | | |||||| |||| ||||||||||||||||| ||||||||||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaacca 21280017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 30735984 - 30736067
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||||||||||||  |||| || ||||||  |||||| ||| |||| ||||  ||||||||||||| || |||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaa 30736067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 45817 - 45713
Alignment:
Q  150 aaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctttc 249  Q
    |||||||||||||||||||||||||||||||||| ||||||| | || ||| |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 45718  T
Q  250 atctc 254  Q
    |||||    
T  45717 atctc 45713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 35556 - 35450
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaaccatattttctctt 247  Q
    |||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||| ||| || |||||||||| |||||||||||||| ||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctt 35457  T
Q  248 tcatctc 254  Q
    |||||||    
T  35456 tcatctc 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 685 - 773
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| || ||||||| |||||| ||| |||| |||| |||||||||||||| || ||||||||||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaacca 773  T

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Target: scaffold0385 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 11251 - 11339
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||| |||||||||| ||||| |||||||||  |||||| |||||||  |||| |||||||||||||| || ||||||||||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaacca 11339  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 112656 - 112743
Alignment:
Q  149 gaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    ||||||||||||||||||||||||| || ||||    |||||| |||| ||| |||| |||||||||||||| || ||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaacca 112743  T

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Target: scaffold0187 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 14288 - 14200
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  ||||||  |||||| | || ||| |||| ||||||||| |||| || ||||||||||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaacca 14200  T

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Target: scaffold0187; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 24616 - 24528
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaacca 236  Q
    |||||||||||||||||||||||||| |  ||||||  |||||| | || ||| |||| ||||||||| |||| || ||||||||||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaacca 24528  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 23521 - 23436
Alignment:
Q  148 ggaaaatgttacatgaacaccctttaatcatacaccttattgtataccccatgcattaaggatattttggtaaatttatctcacaa 233  Q
    ||||||||||| |||||||||||||| || |||||   |||||| | |||||| ||||  ||||||||||||| || |||| ||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaa 23436  T

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