View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17935_high_15 (Length: 243)

Name: NF17935_high_15
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17935_high_15
NF17935_high_15
[»] chr4 (13 HSPs)
chr4 (131-226)||(38851356-38851451)
chr4 (88-131)||(38851759-38851802)
chr4 (1-35)||(4712522-4712556)
chr4 (1-35)||(16959767-16959801)
chr4 (1-35)||(17107776-17107810)
chr4 (1-35)||(17865321-17865355)
chr4 (1-35)||(42239418-42239452)
chr4 (1-37)||(13683342-13683378)
chr4 (5-35)||(13492888-13492918)
chr4 (1-35)||(16491991-16492025)
chr4 (1-35)||(22487563-22487597)
chr4 (1-31)||(26314484-26314514)
chr4 (1-35)||(46481262-46481296)
[»] scaffold0817 (1 HSPs)
scaffold0817 (1-35)||(4327-4361)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-35)||(36771-36805)
[»] chr8 (8 HSPs)
chr8 (1-35)||(6944002-6944036)
chr8 (1-35)||(18764289-18764323)
chr8 (1-35)||(31186689-31186723)
chr8 (1-35)||(2835438-2835472)
chr8 (1-31)||(3273065-3273095)
chr8 (1-35)||(13154584-13154618)
chr8 (1-35)||(24332603-24332637)
chr8 (1-35)||(31402916-31402950)
[»] chr7 (6 HSPs)
chr7 (1-35)||(19158038-19158072)
chr7 (1-35)||(20757437-20757471)
chr7 (1-35)||(44219298-44219332)
chr7 (1-35)||(24360-24394)
chr7 (1-35)||(13426329-13426363)
chr7 (1-31)||(22364665-22364695)
[»] chr6 (7 HSPs)
chr6 (1-35)||(5404915-5404949)
chr6 (1-35)||(5409240-5409274)
chr6 (1-35)||(5924173-5924207)
chr6 (1-35)||(19661354-19661388)
chr6 (1-35)||(9571741-9571775)
chr6 (1-31)||(17238379-17238409)
chr6 (1-35)||(26272325-26272359)
[»] chr5 (6 HSPs)
chr5 (1-35)||(14869017-14869051)
chr5 (1-35)||(3598417-3598451)
chr5 (1-35)||(4122583-4122617)
chr5 (1-35)||(6497537-6497571)
chr5 (1-35)||(22394128-22394162)
chr5 (1-31)||(24490852-24490882)
[»] chr3 (8 HSPs)
chr3 (1-35)||(17109855-17109889)
chr3 (2-35)||(27934797-27934830)
chr3 (1-35)||(29838298-29838332)
chr3 (1-31)||(32315384-32315414)
chr3 (1-35)||(33162328-33162362)
chr3 (1-35)||(46962586-46962620)
chr3 (1-35)||(50645817-50645851)
chr3 (1-35)||(55092552-55092586)
[»] chr2 (9 HSPs)
chr2 (1-35)||(2395502-2395536)
chr2 (1-35)||(18369017-18369051)
chr2 (1-35)||(42705297-42705331)
chr2 (1-31)||(4171870-4171900)
chr2 (1-35)||(14379117-14379151)
chr2 (1-35)||(28921538-28921572)
chr2 (1-35)||(29683519-29683553)
chr2 (1-31)||(30432604-30432634)
chr2 (1-35)||(33940685-33940719)
[»] chr1 (7 HSPs)
chr1 (1-35)||(14602353-14602387)
chr1 (1-35)||(20061802-20061836)
chr1 (1-35)||(28031992-28032026)
chr1 (1-35)||(50625109-50625143)
chr1 (1-35)||(42155094-42155128)
chr1 (1-35)||(47829305-47829339)
chr1 (1-31)||(50096478-50096508)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-35)||(74258-74292)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 38851451 - 38851356
Alignment:
Q  131 ggactttgggtttggatggaagagtaatttgtcaattttggggagnnnnnnnnncctaagcccgggaactcatcactcaattctgtccttcatttc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||| |||||||||||    
T  38851451 ggactttgggtttggatggaagagtaatttgtcaattttgggggaatataaatacctaagcccgggaactcatcactcaattctctccttcatttc 38851356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 38851802 - 38851759
Alignment:
Q  88 catccacaatattaacacactttcttgaagagataggaatctag 131  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  38851802 catccacaatattaacactctttcttgaagagatatgaatctag 38851759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4712522 - 4712556
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4712522 aaatgtcagatatttgcagggactattttcatatt 4712556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16959801 - 16959767
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  16959801 aaatgtcagatatttgcagggactattttcatatt 16959767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17107776 - 17107810
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17107776 aaatgtcagatatttgcagggactattttcatatt 17107810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17865321 - 17865355
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17865321 aaatgtcagatatttgcagggactattttcatatt 17865355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42239418 - 42239452
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42239418 aaatgtcagatatttgcagggactattttcatatt 42239452  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13683342 - 13683378
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatattaa 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13683342 aaatgtcagatatttgcagggactattttcacattaa 13683378  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 13492918 - 13492888
Alignment:
Q  5 gtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||    
T  13492918 gtcagatatttgcagggactattttcatatt 13492888  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16491991 - 16492025
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  16491991 aaatgtcagatatttgcagtgactattttcatatt 16492025  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22487563 - 22487597
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  22487563 aaatgtcaaatatttgcagggactattttcatatt 22487597  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26314514 - 26314484
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  26314514 aaatgtcagatatttgcagggactattttca 26314484  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46481262 - 46481296
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  46481262 aaatgttagatatttgcagggactattttcatatt 46481296  T

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Target: scaffold0817 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4327 - 4361
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4327 aaatgtcagatatttgcagggactattttcatatt 4361  T

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Target: scaffold0137 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36805 - 36771
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36805 aaatgtcagatatttgcagggactattttcatatt 36771  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6944002 - 6944036
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6944002 aaatgtcagatatttgcagggactattttcatatt 6944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18764323 - 18764289
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18764323 aaatgtcagatatttgcagggactattttcatatt 18764289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31186689 - 31186723
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31186689 aaatgtcagatatttgcagggactattttcatatt 31186723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2835438 - 2835472
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  2835438 aaatgtcagatatttgcggggactattttcatatt 2835472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3273065 - 3273095
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  3273065 aaatgtcagatatttgcagggactattttca 3273095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13154584 - 13154618
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  13154584 aaatgtcagatatttgtagggactattttcatatt 13154618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24332603 - 24332637
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24332603 aaatgtcagatatttgcagggacaattttcatatt 24332637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31402950 - 31402916
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  31402950 aaatatcagatatttgcagggactattttcatatt 31402916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19158038 - 19158072
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19158038 aaatgtcagatatttgcagggactattttcatatt 19158072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20757437 - 20757471
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20757437 aaatgtcagatatttgcagggactattttcatatt 20757471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44219332 - 44219298
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  44219332 aaatgtcagatatttgcagggactattttcatatt 44219298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24394 - 24360
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  24394 aaatgtcagatatttgccgggactattttcatatt 24360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13426363 - 13426329
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  13426363 aaatgtcagatatttgcagggactattttgatatt 13426329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22364695 - 22364665
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  22364695 aaatgtcagatatttgcagggactattttca 22364665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5404915 - 5404949
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5404915 aaatgtcagatatttgcagggactattttcatatt 5404949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5409240 - 5409274
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5409240 aaatgtcagatatttgcagggactattttcatatt 5409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5924173 - 5924207
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5924173 aaatgtcagatatttgcagggactattttcatatt 5924207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19661388 - 19661354
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19661388 aaatgtcagatatttgcagggactattttcatatt 19661354  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9571741 - 9571775
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  9571741 aaatgtcagatatttgcaaggactattttcatatt 9571775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 17238379 - 17238409
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  17238379 aaatgtcagatatttgcagggactattttca 17238409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26272325 - 26272359
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  26272325 aaatgtcagatatttacagggactattttcatatt 26272359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14869017 - 14869051
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14869017 aaatgtcagatatttgcagggactattttcatatt 14869051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3598451 - 3598417
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  3598451 aaatgtcagatatttgcagggaccattttcatatt 3598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4122617 - 4122583
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  4122617 aaatgtcaaatatttgcagggactattttcatatt 4122583  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6497537 - 6497571
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  6497537 aaatgtcagatatttgcagggacaattttcatatt 6497571  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22394162 - 22394128
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  22394162 aaatgtcagatatttgcagggacaattttcatatt 22394128  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 24490882 - 24490852
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  24490882 aaatgtcagatatttgcagggactattttca 24490852  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17109889 - 17109855
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17109889 aaatgtcagatatttgcagggactattttcatatt 17109855  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 27934797 - 27934830
Alignment:
Q  2 aatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||||||||||||||    
T  27934797 aatgtcagatatttgcagggactattttcatatt 27934830  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29838332 - 29838298
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  29838332 aaatatcagatatttgcagggactattttcatatt 29838298  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32315414 - 32315384
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  32315414 aaatgtcagatatttgcagggactattttca 32315384  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33162362 - 33162328
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  33162362 aaatgtcagatatttgcggggactattttcatatt 33162328  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46962620 - 46962586
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  46962620 aaatatcagatatttgcagggactattttcatatt 46962586  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50645817 - 50645851
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  50645817 aaatgtcagatatttacagggactattttcatatt 50645851  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 55092552 - 55092586
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  55092552 aaatgtcagatatttggagggactattttcatatt 55092586  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2395502 - 2395536
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2395502 aaatgtcagatatttgcagggactattttcatatt 2395536  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18369051 - 18369017
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18369051 aaatgtcagatatttgcagggactattttcatatt 18369017  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42705297 - 42705331
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42705297 aaatgtcagatatttgcagggactattttcatatt 42705331  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4171870 - 4171900
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  4171870 aaatgtcagatatttgcagggactattttca 4171900  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14379151 - 14379117
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  14379151 aaatgtcagatatttgcaaggactattttcatatt 14379117  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28921538 - 28921572
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  28921538 aaatgtcatatatttgcagggactattttcatatt 28921572  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29683519 - 29683553
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  29683519 aaatgtcagatatttgcagggactatttccatatt 29683553  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30432634 - 30432604
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  30432634 aaatgtcagatatttgcagggactattttca 30432604  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33940719 - 33940685
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  33940719 aaatgtaagatatttgcagggactattttcatatt 33940685  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14602353 - 14602387
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14602353 aaatgtcagatatttgcagggactattttcatatt 14602387  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20061836 - 20061802
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20061836 aaatgtcagatatttgcagggactattttcatatt 20061802  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28031992 - 28032026
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28031992 aaatgtcagatatttgcagggactattttcatatt 28032026  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50625109 - 50625143
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  50625109 aaatgtcagatatttgcagggactattttcatatt 50625143  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42155094 - 42155128
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  42155094 aaatgtcagatatttacagggactattttcatatt 42155128  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47829305 - 47829339
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  47829305 aaatgtcagatatttgcagggacaattttcatatt 47829339  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50096478 - 50096508
Alignment:
Q  1 aaatgtcagatatttgcagggactattttca 31  Q
    |||||||||||||||||||||||||||||||    
T  50096478 aaatgtcagatatttgcagggactattttca 50096508  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 74258 - 74292
Alignment:
Q  1 aaatgtcagatatttgcagggactattttcatatt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  74258 aaatgttagatatttgcagggactattttcatatt 74292  T

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