View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17935_high_5 (Length: 379)
Name: NF17935_high_5
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17935_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 55368263 - 55368095
Alignment:
| Q |
18 |
gaaaaagttgtatgaagataagaatcttttattaataaggcttcactttttgaagaagaacttatatgaaaataatttgaatataataatacaggaatat |
117 |
Q |
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| T |
55368263 |
gaaaaagttgtatgaagataagaatcttttattaataaggcttcactttttgaagaagaacttatatgaaaataatttgaatataataatacaggaatat |
55368164 |
T |
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| Q |
118 |
gcacctattctgataagagaagtttgaatcacacggtgattctctcttaggttaaaattattacactta |
186 |
Q |
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| T |
55368163 |
gcacctattctgataagagaagtttgaatcacacggtgattctctcttaggttaaaattattacactta |
55368095 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 55368053 - 55367963
Alignment:
| Q |
217 |
gtcaagaaaattaatgattatcaaaaaataagattcacgcatttaagtgtggagaaaggaggaatttggagttctaacaaagtggtgtcac |
307 |
Q |
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| T |
55368053 |
gtcaagaaaattaatgattatcaaaaaataagattcacgcatttaagtgtggagaaaggaggaatttggagttctatcaaagtggtgtcac |
55367963 |
T |
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