View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17935_low_1 (Length: 909)

Name: NF17935_low_1
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17935_low_1
NF17935_low_1
[»] chr2 (5 HSPs)
chr2 (469-900)||(1614877-1615302)
chr2 (19-397)||(1615407-1615783)
chr2 (517-892)||(24455839-24456207)
chr2 (154-397)||(24455046-24455282)
chr2 (471-520)||(24455400-24455449)
[»] chr8 (4 HSPs)
chr8 (517-889)||(43228075-43228439)
chr8 (287-375)||(43227403-43227489)
chr8 (539-738)||(14839131-14839323)
chr8 (471-513)||(43227620-43227662)
[»] chr3 (3 HSPs)
chr3 (515-746)||(49234306-49234533)
chr3 (517-746)||(49233735-49233959)
chr3 (305-386)||(48909245-48909326)
[»] chr1 (4 HSPs)
chr1 (517-746)||(50862518-50862741)
chr1 (517-570)||(47723984-47724037)
chr1 (517-570)||(47730976-47731029)
chr1 (315-382)||(35361052-35361119)
[»] chr7 (1 HSPs)
chr7 (539-738)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 469 - 900
Target Start/End: Complemental strand, 1615302 - 1614877
Alignment:
469 ggtaggcaaattcaacattgtgaagcttgaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctggt 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1615302 ggtaggcaaattcaacattgtgaagcttgaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctggt 1615203  T
569 tttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctcttta 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1615202 tttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctcttta 1615103  T
669 tgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctttgtcttcatgtgttttggctcaatttacnnnnnnnnntattgtcttttta 768  Q
    |||||||     |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||         |||||||||||||    
1615102 tgtttca-----actgcaccgtatcggttttattttcttctctttgcctttgtcttcatgcgttttgtctcaatttac-aaaaaaaatattgtcttttta 1615009  T
769 accggctgtttgtattgttctcctgttgctttttcagaataggttgttgtagtttggctctttagtgtagttgattttgctttgttttctttgggattgt 868  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
1615008 accggctgtttgtattgttctcctgttgctttttcagaataggttgttgtagtttggctctttagtgtagttgattttgctttgttttctttgagattgt 1614909  T
869 ttcttatgttctcttggttcttatattcttgg 900  Q
    |||||||||||||||||||||||| |||||||    
1614908 ttcttatgttctcttggttcttattttcttgg 1614877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 1615783 - 1615407
Alignment:
19 aatccagttgcagcttagcggcttttattctactaattgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttg 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1615783 aatccagttgcagcttagcggcttttattctactatttgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttg 1615684  T
119 tttgtattgaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcagagtatcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1615683 tttgtattgaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcagagtatcaaa 1615584  T
219 atcaagtactgtttgatgggaaaaaatcttacttgatgtcacagtcactgtagttgcaggttgcaatcttatgttattttttcccccttattgtatggat 318  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
1615583 atcaagtattgtttgatgggaaaaaatcttac--gatgtcacagtcactgtggttgcaggttgcaatcttatgttattttttcccccttattttatggat 1615486  T
319 ggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatgaaaattggacag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
1615485 ggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgatgagaagatgaaaattggacag 1615407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 517 - 892
Target Start/End: Original strand, 24455839 - 24456207
Alignment:
517 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 616  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||    
24455839 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgc 24455938  T
617 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcc 716  Q
    |||||||| ||||||| |||||||| ||||  ||||||||||||||||| |  | | |||||||||     | |||||||||||||||||||||||||||    
24455939 agctgctacgtagtggtattttttcctccctatgttctgatttttctctgt--ggtccagctgcac-----catatcggttttattttcttctctttgcc 24456031  T
717 tttgtcttca-tgtgttttggctcaatttacnnnnnnnnntattgtctttttaaccggctgtttgtattgttctcctgttgctttttcagaataggttgt 815  Q
    ||||| |||  ||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||    
24456032 tttgttttctgtgtgttttggctcaatttacaaaaaaat-tattgtctttttaactggctgtttgtattgttctcctgttagtttttctgaataggttgt 24456130  T
816 tgtagtttggctctttagtgtagttgattttgctttgttttctttgggattgtttcttatgttctcttggttcttat 892  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24456131 tgtagtttggctctatagtgtagttgattttgctttgttttctttgggattgtttcttatgttctcttggttcttat 24456207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 154 - 397
Target Start/End: Original strand, 24455046 - 24455282
Alignment:
154 acagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagca-gagtatcaaaatcaagtactgtttgatgggaaaaaatcttactt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||     
24455046 acagtttagttttctattttaaacaaatttaacaccaccaacataggatgaagcaggagtatcaaaatcaagttttgtttgatgggaaaaaatcttact- 24455144  T
253 gatgtcacagtcactgtagttgcaggttgcaatcttatg--ttattttttcccccttattgtatggatggtggtgtggctaggtttg-aattcatacgct 349  Q
              | ||||| |||||||||||||||||||||  || |||||||  || |||| ||||||||||||||||||||| |||| ||||||||||||    
24455145 ----------ttactgtggttgcaggttgcaatcttatgtttttttttttcttccgtattttatggatggtggtgtggctagatttgaaattcatacgct 24455234  T
350 gaagatgatgaagagtgatgctttgacgagaagatgaaaattggacag 397  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||    
24455235 gaagatgatgaagagtgatgcttttatgagaagatgaaatttggacag 24455282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 24455400 - 24455449
Alignment:
471 taggcaaattcaacattgtgaagcttgaaagaagaatgactatatatgca 520  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
24455400 taggcaaattcaatattgtgaagcttgaaagaagaatgactatatatgca 24455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 517 - 889
Target Start/End: Original strand, 43228075 - 43228439
Alignment:
517 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 616  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||| | | |||    
43228075 tgcataatttggagtgagatcggggtgattttctgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgc 43228174  T
617 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcc 716  Q
    |||| |||  | ||||| ||||||| |||| | |||||||||| ||||| |  ||| ||||||||      | ||||||||||| |||||||||||||||    
43228175 agcttctacctggtggcgttttttcctccctgcgttctgatttgtctctgt--gttccagctgcaa-----catatcggttttactttcttctctttgcc 43228267  T
717 tttgtcttcatgtgttttggctcaatttacnnnnnnnnntattgtctttttaaccggctgtttgtattgttctcctgttgctttttcagaataggttgtt 816  Q
    || |||||| ||||||||||||||||||||         || |||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
43228268 ttggtcttcgtgtgttttggctcaatttacaaaaaaaa-tactgtctttttaactggctgtttgtattggtctcctgttgcttttttagaataggttgtt 43228366  T
817 gtagtttggctctttagtgtagttgattttgctttgttttctttgggattgtttcttatgttctcttggttct 889  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
43228367 gtagtttggctctttagtgtagttgattttggtttgttttctttgggatagtttcttatgttctcttggttct 43228439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 43227403 - 43227489
Alignment:
287 ttatgttattttttcccccttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttga 375  Q
    |||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
43227403 ttatgttatttttttcc--ttattttatggatggtggtgtggctaggtttgaattcatacgttgaagatgacaaagagtgatgctttga 43227489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 539 - 738
Target Start/End: Original strand, 14839131 - 14839323
Alignment:
539 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcatttt 638  Q
    |||| ||||||  |||| ||||||||||||||||  ||| |||||||||||| |||||| || ||||||||||| |||| |||||| |||| ||  ||||    
14839131 aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagtttt 14839230  T
639 ttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctttgtcttcatgtgttttggct 738  Q
    ||| ||||   |||||||||| ||||  | |||| |||     ||||| | |||||||||||||||||||||||| ||| |||||||| |||||||||||    
14839231 ttcctccctacgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttattttcttctcttttcctctgtcttcaagtgttttggct 14839323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 43227620 - 43227662
Alignment:
471 taggcaaattcaacattgtgaagcttgaaagaagaatgactat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||    
43227620 taggcaaattcaacattgtgaagcttgaaagaagaatgactat 43227662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 515 - 746
Target Start/End: Complemental strand, 49234533 - 49234306
Alignment:
515 tatgcatagtttggagagagatcgaggtgattttct-gcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtat 613  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||     
49234533 tatgcataatttggagcgagatcgaggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtac 49234434  T
614 tgcagctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctcttt 713  Q
    |||||||||||  ||||||||||||||| |||| |||||||||||| ||| ||| |||| ||||||||      | ||| ||||||| ||||||||||||    
49234433 tgcagctgctacatagtggcattttttcctccctgtgttctgatttgtctatttgtgttccagctgcaa-----catattggttttaatttcttctcttt 49234339  T
714 gcctttgtcttcatgtgttttggctcaatttac 746  Q
    ||||| |||||||||||||||||||||||||||    
49234338 gccttggtcttcatgtgttttggctcaatttac 49234306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 517 - 746
Target Start/End: Complemental strand, 49233959 - 49233735
Alignment:
517 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 616  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |    
49233959 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactac 49233860  T
617 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcc 716  Q
    ||||||||  |||||||||| |||| |||| ||||| |||||| ||| ||| |||| ||||||||      | ||| ||||||| |||||||||||||||    
49233859 agctgctacatagtggcattctttcctccctgtgttttgatttgtctatttgtgttccagctgcaa-----catattggttttaatttcttctctttgcc 49233765  T
717 tttgtcttcatgtgttttggctcaatttac 746  Q
    || ||||||||||||||||||| |||||||    
49233764 ttggtcttcatgtgttttggcttaatttac 49233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 48909326 - 48909245
Alignment:
305 cttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatga 386  Q
    |||||| ||||||||||||| | |||||| |||| |||| | | ||||||||||| ||||||| ||||||| ||||||||||    
48909326 cttattttatggatggtggtcttgctaggcttgagttcaaatgttgaagatgatggagagtgaggctttgatgagaagatga 48909245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 9e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 517 - 746
Target Start/End: Original strand, 50862518 - 50862741
Alignment:
517 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 616  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| | ||||| || ||||||| |||    
50862518 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgc 50862617  T
617 agctgctatgtagtggcattttttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcc 716  Q
    ||||| ||  ||||||| ||||||| |||| |||||||||||| ||| ||| |||| ||     |||||| | |||  |||||| |||||||||||||||    
50862618 agctggtacatagtggcgttttttcctccctgtgttctgatttgtctatttgtgttcca-----actgcaacatattagttttaatttcttctctttgcc 50862712  T
717 tttgtcttcatgtgttttggctcaatttac 746  Q
    || ||||||||||||||||| |||||||||    
50862713 ttggtcttcatgtgttttgg-tcaatttac 50862741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 47723984 - 47724037
Alignment:
517 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttt 570  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
47723984 tgcataatttggagcgagatcgaggtgattttctgcatcatttagagctggttt 47724037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 47730976 - 47731029
Alignment:
517 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttt 570  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
47730976 tgcataatttggagcgagatcgaggtgattttctgcatcatttagagctggttt 47731029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 35361119 - 35361052
Alignment:
315 ggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaag 382  Q
    ||||||||||||||||   ||||| |||||| | |||||||||||||||||||  |||||| ||||||    
35361119 ggatggtggtgtggctctatttgagttcataggttgaagatgatgaagagtgagactttgatgagaag 35361052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 539 - 738
Target Start/End: Complemental strand, 27962559 - 27962367
Alignment:
539 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcatttt 638  Q
    |||| ||||||  |||| ||||||||||||||||  ||| |||||||||||| |||||| || ||||||||||| |||| |||||| |||| ||  ||||    
27962559 aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagtttt 27962460  T
639 ttcttccccgtgttctgatttttctctttatgtttcagctgcactgcaccgtatcggttttattttcttctctttgcctttgtcttcatgtgttttggct 738  Q
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27962459 ttcctccctacgttctgatttgtctc--tgtgttccag-----ctgcaacatatcggttttattttcttctcttttcctctgtcttcaagtgttttggct 27962367  T

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