View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17935_low_10 (Length: 301)

Name: NF17935_low_10
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17935_low_10
NF17935_low_10
[»] chr8 (3 HSPs)
chr8 (15-290)||(115358-115633)
chr8 (25-295)||(178152-178422)
chr8 (77-293)||(606841-607057)
[»] chr4 (1 HSPs)
chr4 (40-290)||(37438009-37438259)
[»] scaffold0209 (2 HSPs)
scaffold0209 (32-293)||(9767-10028)
scaffold0209 (32-293)||(23221-23482)
[»] chr7 (1 HSPs)
chr7 (118-158)||(25539363-25539403)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 115358 - 115633
Alignment:
Q  15 agctttgaagcacttgcaacacggtaaacaacctaaacaaagaaaccaactcaacaagggttttttctcaaactttatgtcaagcaatgatctgttatga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  115358 agctttgaagcacttgcaacacggtaaacaacctaaacaaagaaaccaactcaacaaaggttttttctcaaactttatgtcaagcaatgatctgttatga 115457  T
Q  115 accttctcaaagcttataccagcttcattcaactttgttgcagtccttaccatcaaacattctttgtgaaaatcattatactgattttttagtttcatag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115458 accttctcaaagcttataccagcttcattcaactttgttgcagtccttaccatcaaacattctttgtgaaaatcattatactgattttttagtttcatag 115557  T
Q  215 ggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115558 ggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctga 115633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 178422 - 178152
Alignment:
Q  25 cacttgcaacacggtaaacaacctaaacaaagaaaccaactcaacaagggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaa 124  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||||||||||    
T  178422 cacttgcaacatggtaaacaacctaaacataaaaaccaactcaacaaagggtttttctcaaacttaatgtcaagtaaggatctgttatgaaccttctcaa 178323  T
Q  125 agcttataccagcttcattcaactttgttgcagtccttaccatcaaacattctttgtgaaaatcattatactgattttttagtttcatagggagatagga 224  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||| |||||   | || | |  | | |||||| |||||||| |     
T  178322 agcttataccagcttcattcaactttgttgcactccttaacatcaaacactctttatgagaatcagagttcttagtgctaattttcatggggagataagc 178223  T
Q  225 atatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgatgatg 295  Q
    | ||||||| |||||| |||||||| ||||||||||||| ||||||| | ||||| | |||||||| ||||    
T  178222 acatctaattaaatcaatgaaatgaagtgatttctcccacttctttgacccaaacatactttctgaagatg 178152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 293
Target Start/End: Complemental strand, 607057 - 606841
Alignment:
Q  77 ttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagcttataccagcttcattcaactttgttgcagtccttaccatcaaacattc 176  Q
    |||||| ||||||||||||||| || ||||| |||| ||| ||||| | |||||| ||||||||||||||||||||||||||||||  ||||||||| ||    
T  607057 ttttcttaaactttatgtcaagtaaggatctattataaactttctcgaggcttatgccagcttcattcaactttgttgcagtccttgacatcaaacactc 606958  T
Q  177 tttgtgaaaatcattatactgattttttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctca 276  Q
     || ||| ||||  |||| ||||   |||||||||| |||||||| ||||||||||||||||| ||||||||  ||||||||||||| || ||| |||||    
T  606957 attttgagaatccatatattgatcgcttagtttcattgggagatatgaatatctaatcaaatcggtgaaatggagtgatttctcccaatttttttcctca 606858  T
Q  277 aactttctttctgatga 293  Q
    ||| |||||||||||||    
T  606857 aacattctttctgatga 606841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 37438009 - 37438259
Alignment:
Q  40 aaacaacctaaacaaagaaaccaactcaacaagggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagcttataccagctt 139  Q
    |||||||| ||||||| |||| ||||||  || |||||| |||||||||||| || || ||| ||||| |||||||  |||||||||||||||| |||||    
T  37438009 aaacaacccaaacaaataaactaactcagaaaaggttttatctcaaactttacgtaaatcaaggatcttttatgaattttctcaaagcttatactagctt 37438108  T
Q  140 cattcaactttgttgcagtccttaccatcaaacattctttgtgaaaatcattatactgattttttagtttcatagggagataggaatatctaatcaaatc 239  Q
    |||||||  |||||| |||||||| ||||||||| ||||| ||| ||||| |||  |||||  |||||||||| |||||||   || |||||||||||||    
T  37438109 cattcaatgttgttggagtccttaacatcaaacactctttttgagaatcaatattttgattgcttagtttcatcgggagatcataacatctaatcaaatc 37438208  T
Q  240 agtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctga 290  Q
    | |||||||| || |||| ||||| || |||| ||||||||||||||||||    
T  37438209 aatgaaatgaagttatttgtcccaattttttgactcaaactttctttctga 37438259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 293
Target Start/End: Original strand, 9767 - 10028
Alignment:
Q  32 aacacggtaaacaacctaaacaaagaaaccaactcaacaagggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagcttat 131  Q
    |||| ||||||||||||||||||||||||||||| || ||||| ||||||| ||| || |||||||| ||  ||| ||| ||||| |||| |||||||||    
T  9767 aacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgtgaactttctgaaagcttat 9866  T
Q  132 accagcttcattcaactttgttgcagtccttaccatcaaacattctttgtgaaaatcattatactgattttttagtttcatagggagataggaatatcta 231  Q
     ||| |||  || | ||||||||||||||||  | ||||||||| | | ||| ||||| |||  |||||  |||| ||||| |||||||| ||| | |||    
T  9867 gccaacttgtttaagctttgttgcagtccttggcttcaaacattttctttgagaatcaatatgttgattgcttagcttcattgggagataagaagaccta 9966  T
Q  232 atcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgatga 293  Q
    ||||||||||| ||||||  |||||||||||| || ||| |||||||| |||||| ||||||    
T  9967 atcaaatcagtaaaatgaaatgatttctcccaatttttttcctcaaacattctttttgatga 10028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 293
Target Start/End: Original strand, 23221 - 23482
Alignment:
Q  32 aacacggtaaacaacctaaacaaagaaaccaactcaacaagggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagcttat 131  Q
    |||| ||||||||||||||||||||||||||||| || ||||| ||||||| ||| || |||||||| ||  ||| ||| ||||| |||| |||||||||    
T  23221 aacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgtgaactttctgaaagcttat 23320  T
Q  132 accagcttcattcaactttgttgcagtccttaccatcaaacattctttgtgaaaatcattatactgattttttagtttcatagggagataggaatatcta 231  Q
     ||| |||  || | ||||||||||||||||  | ||||||||| | | ||| ||||| |||  |||||  |||| ||||| |||||||| ||| | |||    
T  23321 gccaacttgtttaagctttgttgcagtccttggcttcaaacattttctttgagaatcaatatgttgattgcttagcttcattgggagataagaagaccta 23420  T
Q  232 atcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgatga 293  Q
    ||||||||||| ||||||  |||||||||||| || ||| |||||||| |||||| ||||||    
T  23421 atcaaatcagtaaaatgaaatgatttctcccaatttttttcctcaaacattctttttgatga 23482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 25539403 - 25539363
Alignment:
Q  118 ttctcaaagcttataccagcttcattcaactttgttgcagt 158  Q
    ||||||||||| ||| | |||||||||||||||||||||||    
T  25539403 ttctcaaagctaatatccgcttcattcaactttgttgcagt 25539363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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