View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17935_low_12 (Length: 287)
Name: NF17935_low_12
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17935_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 49974697 - 49974439
Alignment:
| Q |
11 |
cagagaaacggatttgaatttcattattatttcattctctgtcattacttgatatatgcttagatgtatttctcgcaaagaatcgacctctaatgactac |
110 |
Q |
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| T |
49974697 |
cagagaaacggatttgaatttcattattatttcattctctgtcattacttgatatatgctgagatgtatttctcgcaaagaatcgacctctaatgactac |
49974598 |
T |
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| Q |
111 |
tttatatggttgcttagtgttatccgtatatatatgcagattgcagaagcaactattcattactacttaattacagtcgactttatagaggtgagagtgt |
210 |
Q |
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| T |
49974597 |
tttatatggttgcttagtgttatccgtatatatatgcagattgcagaagcaactattcattactacttaattacagtcaactttatagaggtgagagtgt |
49974498 |
T |
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| Q |
211 |
gtacaactaaaagagttgtaagagtaaatataagtactagagccaccaatgactccttt |
269 |
Q |
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| T |
49974497 |
gtacaactaaaagagttgtaagagtaaatataagtactagagccactaatgactccttt |
49974439 |
T |
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