View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17935_low_3 (Length: 574)

Name: NF17935_low_3
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17935_low_3
NF17935_low_3
[»] chr1 (23 HSPs)
chr1 (17-562)||(29099536-29100073)
chr1 (14-185)||(15495877-15496048)
chr1 (14-185)||(14351048-14351218)
chr1 (304-419)||(19258742-19258857)
chr1 (302-421)||(2509028-2509147)
chr1 (302-421)||(34307206-34307325)
chr1 (14-93)||(11814700-11814779)
chr1 (302-421)||(39249931-39250050)
chr1 (302-421)||(46901803-46901922)
chr1 (18-124)||(2077418-2077523)
chr1 (85-177)||(26842000-26842092)
chr1 (14-93)||(26842049-26842127)
chr1 (337-419)||(28647392-28647474)
chr1 (14-77)||(8039197-8039259)
chr1 (129-188)||(10494882-10494941)
chr1 (113-184)||(26236753-26236824)
chr1 (303-381)||(10146971-10147049)
chr1 (14-96)||(615641-615723)
chr1 (14-95)||(34654839-34654920)
chr1 (145-185)||(2077379-2077419)
chr1 (355-419)||(8848923-8848987)
chr1 (346-421)||(9642933-9643009)
chr1 (14-58)||(39709190-39709234)
[»] chr2 (24 HSPs)
chr2 (14-187)||(6705509-6705682)
chr2 (45-188)||(40900224-40900367)
chr2 (304-417)||(37914308-37914421)
chr2 (302-417)||(36315565-36315680)
chr2 (302-421)||(44958117-44958236)
chr2 (302-421)||(33732573-33732692)
chr2 (33-188)||(38531278-38531433)
chr2 (14-140)||(14950753-14950879)
chr2 (302-421)||(37498931-37499052)
chr2 (303-421)||(3830965-3831081)
chr2 (302-421)||(14572999-14573118)
chr2 (346-421)||(24137160-24137235)
chr2 (14-124)||(9910631-9910740)
chr2 (304-421)||(6376306-6376418)
chr2 (34-135)||(28164837-28164938)
chr2 (302-421)||(16089826-16089944)
chr2 (353-421)||(41188824-41188892)
chr2 (14-96)||(4869516-4869598)
chr2 (14-185)||(1551698-1551859)
chr2 (107-183)||(3921536-3921612)
chr2 (14-184)||(17282046-17282206)
chr2 (31-77)||(27888778-27888824)
chr2 (107-180)||(34660230-34660303)
chr2 (104-184)||(1895351-1895431)
[»] chr5 (31 HSPs)
chr5 (14-184)||(40680874-40681044)
chr5 (14-185)||(26331090-26331261)
chr5 (302-421)||(1815684-1815803)
chr5 (302-421)||(40888010-40888129)
chr5 (302-421)||(9408107-9408226)
chr5 (302-421)||(39370931-39371050)
chr5 (21-135)||(12156370-12156484)
chr5 (304-421)||(2237282-2237399)
chr5 (333-421)||(17225352-17225440)
chr5 (302-419)||(4300613-4300730)
chr5 (14-163)||(24867100-24867249)
chr5 (14-125)||(34574162-34574272)
chr5 (313-419)||(14831559-14831665)
chr5 (14-96)||(27170243-27170325)
chr5 (304-421)||(13347134-13347251)
chr5 (23-124)||(42268836-42268936)
chr5 (302-394)||(33404531-33404623)
chr5 (307-421)||(41003918-41004031)
chr5 (302-421)||(27553441-27553560)
chr5 (336-421)||(31800596-31800681)
chr5 (14-77)||(40599972-40600035)
chr5 (302-386)||(12164255-12164339)
chr5 (304-387)||(19596169-19596252)
chr5 (14-176)||(26656639-26656790)
chr5 (14-176)||(26928226-26928377)
chr5 (15-89)||(7271718-7271792)
chr5 (32-96)||(6030500-6030564)
chr5 (117-180)||(7271788-7271851)
chr5 (302-421)||(19124540-19124657)
chr5 (14-176)||(41355620-41355772)
chr5 (14-68)||(42221396-42221450)
[»] chr4 (25 HSPs)
chr4 (14-184)||(45873110-45873280)
chr4 (18-185)||(55728704-55728871)
chr4 (302-417)||(45829329-45829444)
chr4 (302-417)||(46192363-46192478)
chr4 (20-135)||(42677627-42677742)
chr4 (14-125)||(12130522-12130633)
chr4 (302-421)||(44275710-44275829)
chr4 (14-183)||(38093223-38093393)
chr4 (302-421)||(3672278-3672397)
chr4 (302-421)||(6112634-6112753)
chr4 (302-421)||(7217769-7217888)
chr4 (302-421)||(28093164-28093283)
chr4 (302-421)||(49243819-49243938)
chr4 (302-421)||(21391023-21391142)
chr4 (302-421)||(35544916-35545035)
chr4 (346-421)||(51038811-51038887)
chr4 (14-65)||(14441123-14441174)
chr4 (14-184)||(47518552-47518712)
chr4 (14-96)||(34227172-34227254)
chr4 (107-180)||(23054338-23054411)
chr4 (33-177)||(24957685-24957819)
chr4 (302-342)||(43245522-43245562)
chr4 (303-419)||(54849793-54849909)
chr4 (14-139)||(53202127-53202241)
chr4 (14-86)||(12489182-12489254)
[»] chr7 (28 HSPs)
chr7 (304-421)||(23980137-23980254)
chr7 (18-189)||(21590510-21590682)
chr7 (304-421)||(5811231-5811348)
chr7 (302-421)||(7699951-7700070)
chr7 (302-421)||(7700149-7700268)
chr7 (302-421)||(7700347-7700466)
chr7 (302-421)||(7700545-7700664)
chr7 (302-421)||(42221031-42221150)
chr7 (304-421)||(13108154-13108270)
chr7 (14-135)||(31039008-31039129)
chr7 (304-421)||(31148296-31148413)
chr7 (302-421)||(28307563-28307682)
chr7 (302-421)||(36346633-36346751)
chr7 (302-421)||(21807390-21807509)
chr7 (302-421)||(26972271-26972390)
chr7 (302-421)||(34108430-34108549)
chr7 (302-424)||(30887704-30887826)
chr7 (23-129)||(24718022-24718127)
chr7 (336-421)||(20086696-20086781)
chr7 (349-421)||(46475075-46475147)
chr7 (302-421)||(45782728-45782847)
chr7 (346-421)||(34828113-34828188)
chr7 (303-421)||(38321014-38321132)
chr7 (14-96)||(3302436-3302518)
chr7 (304-421)||(15020288-15020402)
chr7 (18-124)||(43047689-43047794)
chr7 (346-389)||(42950113-42950156)
chr7 (16-72)||(36582839-36582894)
[»] chr6 (11 HSPs)
chr6 (304-421)||(14022940-14023057)
chr6 (304-421)||(24208450-24208567)
chr6 (302-421)||(3986973-3987092)
chr6 (14-133)||(32747641-32747760)
chr6 (302-421)||(13697573-13697691)
chr6 (302-421)||(3118115-3118234)
chr6 (302-421)||(15345727-15345844)
chr6 (43-122)||(30845463-30845542)
chr6 (14-72)||(9566804-9566861)
chr6 (14-70)||(11366700-11366755)
chr6 (107-175)||(21881411-21881479)
[»] chr8 (23 HSPs)
chr8 (302-421)||(30432343-30432462)
chr8 (302-421)||(12665348-12665468)
chr8 (14-96)||(15050124-15050206)
chr8 (302-421)||(42162602-42162721)
chr8 (302-421)||(44081784-44081903)
chr8 (304-421)||(33726017-33726135)
chr8 (14-135)||(25142910-25143031)
chr8 (302-419)||(36189220-36189337)
chr8 (346-421)||(31318853-31318928)
chr8 (302-421)||(10203668-10203787)
chr8 (16-86)||(23635861-23635931)
chr8 (85-185)||(15050070-15050170)
chr8 (302-421)||(18184557-18184676)
chr8 (302-421)||(43186031-43186150)
chr8 (23-92)||(5515298-5515367)
chr8 (346-421)||(38845091-38845165)
chr8 (16-96)||(10408713-10408793)
chr8 (314-389)||(31547-31622)
chr8 (14-96)||(5994493-5994575)
chr8 (42-185)||(6443925-6444057)
chr8 (19-67)||(23635816-23635864)
chr8 (319-421)||(42668850-42668951)
chr8 (14-55)||(3763043-3763084)
[»] chr3 (22 HSPs)
chr3 (302-421)||(46112012-46112131)
chr3 (302-421)||(21559565-21559684)
chr3 (302-421)||(36749410-36749529)
chr3 (304-421)||(39467169-39467286)
chr3 (302-421)||(34749966-34750085)
chr3 (302-421)||(36370406-36370525)
chr3 (302-421)||(43999993-44000112)
chr3 (304-412)||(39072350-39072458)
chr3 (302-421)||(22894684-22894803)
chr3 (14-122)||(31699226-31699333)
chr3 (302-421)||(51339851-51339968)
chr3 (302-421)||(30735564-30735682)
chr3 (302-394)||(29460664-29460756)
chr3 (302-394)||(29471516-29471608)
chr3 (302-386)||(38231297-38231381)
chr3 (248-301)||(37067076-37067129)
chr3 (306-421)||(20856221-20856334)
chr3 (17-96)||(18269875-18269954)
chr3 (328-418)||(53638165-53638255)
chr3 (129-187)||(31699315-31699373)
chr3 (305-398)||(29820390-29820483)
chr3 (128-184)||(18269807-18269863)
[»] scaffold0062 (1 HSPs)
scaffold0062 (302-424)||(6722-6844)
[»] scaffold0092 (1 HSPs)
scaffold0092 (112-188)||(23272-23348)
[»] scaffold0043 (1 HSPs)
scaffold0043 (302-394)||(87259-87350)
[»] scaffold0027 (1 HSPs)
scaffold0027 (14-90)||(2946-3021)
[»] scaffold0044 (1 HSPs)
scaffold0044 (77-163)||(42826-42912)
[»] scaffold0725 (1 HSPs)
scaffold0725 (31-72)||(1080-1121)
[»] scaffold0088 (1 HSPs)
scaffold0088 (31-72)||(26996-27037)
[»] scaffold0157 (1 HSPs)
scaffold0157 (14-86)||(31223-31295)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 562
Target Start/End: Original strand, 29099536 - 29100073
Alignment:
Q  17 ccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 116  Q
    |||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29099536 ccattaaccaccacaaaaaccatcgttaatactcaccaaaaactagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 29099635  T
Q  117 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaagacccagtgtcagaaaataactcttga 216  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29099636 caccaccaagaaccaccacgagcaccaccacagaagacccagtatcagcaccaccatggaaaccaccacaaaagacccagtgtcagaaaataactcttga 29099735  T
Q  217 ggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcggtcttatacataaacc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29099736 ggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaactcatgttttgtagctcgagctggcggtcttatacataaacc 29099835  T
Q  317 atcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaa 416  Q
    | |||||||| ||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29099836 accttagatggcatacactc-tttacgtccacacacatttgtgacatgtgacaaaaacattgaaaaaagaaattaaaaggggtgatgatgtgatgtgaaa 29099934  T
Q  417 ttacttaacaaagannnnnnnnnnaggaaactcaaccaagatctatatctatatcaatacgtttatctgttgacatagtggaaacacgtgttttgtgaaa 516  Q
    ||||||||  ||            |||||||| ||| |||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||    
T  29099935 ttacttaa-taattttttttttttaggaaacttaacaaagatctatatct------atacgtttatctgttaacatagtggaaacacgtgttttgtgaaa 29100027  T
Q  517 attttagtactatatctatatctatacgtttatctgttgacatttt 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29100028 attttagtactatatctatatctatacgtttatctgttgacatttt 29100073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 15495877 - 15496048
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||| ||||||||||   ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||| ||    
T  15495877 ctactattaaccaccaagaaaaccaccattaatcctcaccaaaaaccagcaccagccaccacgagcatcaccaccaaaaaacaacatcagccaccacgag 15495976  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||    
T  15495977 catcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccac 15496048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 14351218 - 14351048
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |||| || |||||||||||||||||| |||| || || |||| ||    
T  14351218 ctaccactaaccaccacaaaaaccaccattaattctcaccaaaaaccagcaccaaccaccactagcatcaccaccaaaaactaacaccagccaccacgag 14351119  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    ||||||||  || |||||||||||| | || |||| || | ||| ||||| ||||| |||||||||||||||    
T  14351118 catcaccataaaaaaccaccacgagaaccaccacaaaaaatccaatatcaacacca-catgaaaaccaccac 14351048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 19258857 - 19258742
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    ||||||||||||||||| || || |||||||  |||||| | |||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaaaaagagatgaaaaggggtggtg 19258758  T
Q  404 atgtgatgtgaaatta 419  Q
    ||||||||||||||||    
T  19258757 atgtgatgtgaaatta 19258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 2509028 - 2509147
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| |||||||||  ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 2509127  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  2509128 tgatatgatgtaaaattact 2509147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 34307325 - 34307206
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| |||| || |||| ||||||    
T  34307325 tcttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtga 34307226  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  34307225 tgatatgatgtaaaattact 34307206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 11814700 - 11814779
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaa 93  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  11814700 ctaccattaaccatcacaaaaaccaccattaatcctcaccaaaaaccagcaccagccaccatgagcatcaccaccaaaaa 11814779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 39250050 - 39249931
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||| || ||     
T  39250050 tcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgg 39249951  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| | |||| ||||||||    
T  39249950 tgatataatgtaaaattact 39249931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 46901922 - 46901803
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| ||||||||||  |||||| |  ||||| |||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  46901922 tcttatacatgaaccaccttaggtgacatacaccattttacaccaacacatatttgtgacacgtggcaaaaacattaaaagaagagatgaaaaagggtga 46901823  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  46901822 tgatatgatgtaaaattact 46901803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 2077523 - 2077418
Alignment:
Q  18 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 117  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | | ||||||||| ||||||||||||| |||||| ||||| || || |||  ||||||    
T  2077523 cattaaccaccacaaaaaccaccattaatcctcaccaaaaatcggtaccagccaccacgagcatcacca-caaaaatcaacaccagccaccatgagcatc 2077425  T
Q  118 accacca 124  Q
    |||||||    
T  2077424 accacca 2077418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 26842092 - 26842000
Alignment:
Q  85 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 177  Q
    ||||||||||||||| || || |||| ||||||| |||||| || ||||||||||| || |||| |||||||||||||| |||||||||||||    
T  26842092 caccaaaaaccaacaccagccaccacgagcatcaacaccaaaaatcaccacgagcaccaccacaaaagacccagtatcaacaccaccatgaaa 26842000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 26842127 - 26842049
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaa 93  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  26842127 ctaccattaaccaccacaaaa-caaccattaatcctcaccaaaaaccaacaccagccaccacgagcatcaacaccaaaaa 26842049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 28647392 - 28647474
Alignment:
Q  337 ttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 419  Q
    |||||| | |||||| |||||||| || ||||||||||||||||| || |||| |||||||||| ||||||||||||||||||    
T  28647392 ttttacacccacacatatttgtgatatttggcaaaaacattgaaagaatagatgaaaaggggtggtgatgtgatgtgaaatta 28647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 8039197 - 8039259
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 77  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  8039197 ctaccattaaccacca-aaaaaccaccagtaatcctcaccaaaaaccagcatcagccaccacga 8039259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 10494882 - 10494941
Alignment:
Q  129 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||||||||||| ||||||    
T  10494882 ccaccacgagcaccaacacaaaagacccaatatcaacaccaccatgaaaaccatcacaaa 10494941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 26236824 - 26236753
Alignment:
Q  113 gcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||| || |||||||||||||| || |||| ||||| ||  |||||||||| ||||||||||||||    
T  26236824 gcatcaccactaaaaaccaccacgagcaccaccacaaaagactcaaaatcagcaccatcatgaaaaccacca 26236753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 10146971 - 10147049
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaa 381  Q
    |||||||||  |||| ||||| || ||||||| |||| || | |||||||| ||||||||||||||||||||| |||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 615641 - 615723
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| ||| || |||||  |||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  615641 ctaccattgaccgccacaaaaggcaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 615723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 34654839 - 34654920
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacc 95  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || ||| |||||| ||  ||| ||||||||||||||    
T  34654839 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacacaagccaccacacgcagcaccaccaaaaacc 34654920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 2077419 - 2077379
Alignment:
Q  145 cacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  2077419 cacaaaagacccagtatcaacaccaccatggaaaccaccac 2077379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 8848987 - 8848923
Alignment:
Q  355 ttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 419  Q
    |||||||||||| |||||||||||||| |||||||   | |||||||   |||||||||||||||    
T  8848987 ttgtgacatgtgacaaaaacattgaaataagagatgggagggggtgagagtgtgatgtgaaatta 8848923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 9643009 - 9642933
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg-tgatgatgtgatgtgaaattact 421  Q
    |||||| | ||||||||  || |||||||| ||||| ||||||| | |||||| ||||||| |||||||||||||||    
T  9643009 cacacataattgtgacacatgacaaaaacaatgaaagaagagatgagaagggggtgatgatatgatgtgaaattact 9642933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 39709234 - 39709190
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaa 58  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||    
T  39709234 ctaccattaaccaccacaaaaatcaccattaaccctcaccaaaaa 39709190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 9e-53; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 6705509 - 6705682
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| || || |||| ||    
T  6705509 ctaccattaaccaacacgaaaaccaccattaatcctcaccaaaaaccaacaccaaccaccacgagcatcaccaccaaaaaacaacaccagccaccacgag 6705608  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 187  Q
    |||||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||    
T  6705609 catcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccacaa 6705682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 40900224 - 40900367
Alignment:
Q  45 atcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcat 144  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||  || |||  || ||||||||||| | |||||||||||| ||     
T  40900224 atcctcaccaaaaaccagcaccagccaccacgagcatcaccacaaaaaaccagcatctgccaccatgagtatcaccaccaaaagccaccacgagcaccac 40900323  T
Q  145 cacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||| ||||||||||||||||||||||||  |||||||||||||    
T  40900324 cacaaaagacccagtatcagcaccaccatagaaaccaccacaaa 40900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 37914421 - 37914308
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||     
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 37914322  T
Q  404 atgtgatgtgaaat 417  Q
    ||||||||||||||    
T  37914321 atgtgatgtgaaat 37914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 36315565 - 36315680
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  36315565 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaagaggtga 36315664  T
Q  402 tgatgtgatgtgaaat 417  Q
    | ||||||||||||||    
T  36315665 taatgtgatgtgaaat 36315680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 44958117 - 44958236
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  44958117 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaagggtga 44958216  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  44958217 tgatatgatgtaaaattact 44958236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 33732573 - 33732692
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||     
T  33732573 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgg 33732672  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  33732673 tgatatgatgtaaaattact 33732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 38531433 - 38531278
Alignment:
Q  33 aaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccac 132  Q
    |||||| | ||||||||||| |||||||||||||| |||| || |||||||| ||||||||| |||| || || |||| || |||||| |||| || |||    
T  38531433 aaaccatcattaatcctcacaaaaaaccagcaccatccaccactagcatcacaaccaaaaactaacaccagccaccacgagtatcaccgccaaaaatcac 38531334  T
Q  133 cacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||||||| || |||| || |||||||||||||||||||||| ||| |||||||||    
T  38531333 cacgagcaccaccacaaaaaacccagtatcagcaccaccatggaaaacaccacaaa 38531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 14950879 - 14950753
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||  ||||||||| || |||||||||||||||||  |||| || ||||||| ||    
T  14950879 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaataccagccaccactagcatcaccaccaaaaaataacaccagccgccacgag 14950780  T
Q  114 catcaccaccaagaaccaccacgagca 140  Q
    |||||||||||| || |||||| ||||    
T  14950779 catcaccaccaaaaatcaccacaagca 14950753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 37499052 - 37498931
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa--ggggt 399  Q
    ||||||| || ||||||||||  || ||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  37499052 tcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagagggt 37498953  T
Q  400 gatgatgtgatgtgaaattact 421  Q
    |||||| |||||| ||||||||    
T  37498952 gatgatatgatgtaaaattact 37498931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 303 - 421
Target Start/End: Complemental strand, 3831081 - 3830965
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 402  Q
    ||||||||| ||||| ||||| |||||||||| ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtggtgat 3830984  T
Q  403 gatgtgatgtgaaattact 421  Q
     || |||||| ||||||||    
T  3830983 tatctgatgtaaaattact 3830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 14572999 - 14573118
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| ||||| || ||| ||| |||||||   ||||||||||||||||| || ||||||||||||||| |||||||  ||| ||||||    
T  14572999 tcttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatggaaaagggtga 14573098  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  14573099 tgatatgatgtaaaattact 14573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 24137235 - 24137160
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  24137235 cacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagggatgaggatgtgatgtgaaattact 24137160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 9910631 - 9910740
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||| || |||||||||| ||||| ||||||| |||||||||||| || || |||| ||    
T  9910631 ctaccattaaccaccacaaaaaccacaattaatccttaccaaaaatcaacaccagccaccacgagtatcacca-caaaaaccaacaccaaccaccacgag 9910729  T
Q  114 catcaccacca 124  Q
    |||||||||||    
T  9910730 catcaccacca 9910740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 6376418 - 6376306
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||     |||||||| ||||||| |||| |||||| |    
T  6376418 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc-----cattgaaagaagagatgaaaatgggtgagg 6376324  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||||||||||||||    
T  6376323 atgtgatgtgaaattact 6376306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 28164938 - 28164837
Alignment:
Q  34 aaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccacc 133  Q
    ||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| || || |||  |||||||||||||| |||||||    
T  28164938 aaccaccattactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgagcatcaccaccaaaaaccacc 28164839  T
Q  134 ac 135  Q
    ||    
T  28164838 ac 28164837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 16089826 - 16089944
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||  || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||  ||||     
T  16089826 tcttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagaga-taaaaaaggtgg 16089924  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  16089925 tgatatgatgtaaaattact 16089944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 41188824 - 41188892
Alignment:
Q  353 atttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    |||| |||||||||||||||||||||||||| || || ||||||| |||||||||||||| ||||||||    
T  41188824 atttatgacatgtggcaaaaacattgaaaaatgatatgaaaagggatgatgatgtgatgtaaaattact 41188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 4869516 - 4869598
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  4869516 ctaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 4869598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 1551859 - 1551698
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||| ||| ||||| | |||||||          |||||||    
T  1551859 ctaccattgaccacctcaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacgcgcagcaccatccaaaacca----------ccacaag 1551770  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||||||||| | |||||||||||||  |  |||  ||||||||  |||||||| |||| ||||||||||||    
T  1551769 catcaccacccaaaaccaccacgagccccgccactaaagacccaaaatcagcactaccaagaaaaccaccac 1551698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 3921536 - 3921612
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 183  Q
    ||||||||||||||||||| |||||||||||||  |  |||| | ||||||  ||||||||||||| ||||||||||    
T  3921536 ccacaagcatcaccaccaaaaaccaccacgagccccgccacaaatgacccaaaatcagcaccaccaagaaaaccacc 3921612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 17282206 - 17282046
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| ||  |||| |||| ||| ||| ||||||| |||||||          ||||||     
T  17282206 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaaaccaaccaccacgcgcagcaccacccaaaacca----------ccacaaa 17282117  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| ||||||||||||   |  |||| ||||||||  ||||||||||||| |||||||||||    
T  17282116 catcaccaccaaaaaccaccacgagtcccgccacaaaagacccaaaatcagcaccaccaagaaaaccacca 17282046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 27888778 - 27888824
Alignment:
Q  31 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 77  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  27888778 aaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacga 27888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 34660230 - 34660303
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 180  Q
    ||||||| | ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  34660230 ccacaagaaccaccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 34660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 1895351 - 1895431
Alignment:
Q  104 ccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||| ||||||||||||||| |||||||||||||  |  |||| ||||||||  ||||  ||||||| |||||||||||    
T  1895351 ccgccataagcatcaccaccaaaaaccaccacgagccccgccacaaaagacccaaaatcaataccaccaagaaaaccacca 1895431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 40680874 - 40681044
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| || |||| ||    
T  40680874 ctaccattaaccaccacgaaaaccaccattaatcctcaccaaaaaccagcaccaaccaccatgagcatcaccaccaaaaaacaacatcagccaccacgag 40680973  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| |||||||| ||||| || |||| |||||| ||||||| ||||||||| ||||||||||    
T  40680974 catcaccaccaaaaaccaccatgagcaccaccacaaaagaccaagtatcaacaccaccataaaaaccacca 40681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 26331261 - 26331090
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| || |||| ||    
T  26331261 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccagacaccacgagcatcaccacctaaaaccaacatcagccaccacgag 26331162  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||||||||||| ||| |  |||  || || |||| ||||| || ||||| |||||||||  ||||||||||    
T  26331161 catcaccaccaaaaactattacggacaccaccacaaaagactcaatatcaacaccaccatagaaaccaccac 26331090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 1815803 - 1815684
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||||||||| |||||||||| |||||||   |||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  1815803 tcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 1815704  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  1815703 tgatatgatgtaaaattact 1815684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 40888129 - 40888010
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  40888129 tcttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 40888030  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  40888029 tgatatgatgtaaaattact 40888010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 9408226 - 9408107
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| || || |||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  9408226 tcttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 9408127  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  9408126 tgatatgatgtaaaattact 9408107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 39370931 - 39371050
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  39370931 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtga 39371030  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  39371031 tgatatgatgtaaaattact 39371050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 12156370 - 12156484
Alignment:
Q  21 taaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcacc 120  Q
    |||||||| ||||||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||| || || ||||||||||||||    
T  12156370 taaccaccacaaaaaccatcattaattctcaccaaaaaccagcaccagccaccactagcatcaccaccaaaaactaacaccagccaccacaagcatcacc 12156469  T
Q  121 accaagaaccaccac 135  Q
    | ||| |||||||||    
T  12156470 atcaaaaaccaccac 12156484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 2237282 - 2237399
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||| ||||| ||||| |||||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 2237381  T
Q  404 atgtgatgtgaaattact 421  Q
    || |||||| ||||||||    
T  2237382 atatgatgtaaaattact 2237399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 17225352 - 17225440
Alignment:
Q  333 actcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  17225352 actcttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagaggtgatgatgtgatgtgaaattact 17225440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 419
Target Start/End: Complemental strand, 4300730 - 4300613
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| |||||| |||| ||||||| |  ||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||| ||||  ||||     
T  4300730 tcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaaaacattgaaataagagataaaaaatggtgg 4300631  T
Q  402 tgatgtgatgtgaaatta 419  Q
    ||||||||||||||||||    
T  4300630 tgatgtgatgtgaaatta 4300613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 24867249 - 24867100
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||  |||||||||||| |||||||||  ||||||||| |  ||  | || |||| ||    
T  24867249 ctaccattaaccaacacaaaaaccaccattaatcctcaccaaaaattagcaccagccaccacgagcatcctcaccaaaaatcggcactagccaccacgag 24867150  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 163  Q
      |||||||||| |||||||||||||| || || | ||||||||||||||    
T  24867149 tctcaccaccaaaaaccaccacgagcaccaccataaaagacccagtatca 24867100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 34574272 - 34574162
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||| |||||| |||||||||||||||||||| ||||| || || | || ||    
T  34574272 ctaccattaaccaccacaaaa-ccaccattactcctcaccaaaaaccaacactagccaccacgagcatcaccaccaaaaatcaacaccagccactacgag 34574174  T
Q  114 catcaccaccaa 125  Q
    ||||||||||||    
T  34574173 catcaccaccaa 34574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 14831559 - 14831665
Alignment:
Q  313 aaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgt 412  Q
    ||||| ||||| || ||||||| ||||||| | ||||||||||||||| | |||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  14831559 aaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgt 14831658  T
Q  413 gaaatta 419  Q
     ||||||    
T  14831659 aaaatta 14831665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 27170325 - 27170243
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||| |||||||||||||||    
T  27170325 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 27170243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 13347134 - 13347251
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| || |||| |||| | ||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaatagatgaaaaagagtgatg 13347233  T
Q  404 atgtgatgtgaaattact 421  Q
    || ||||||  |||||||    
T  13347234 atatgatgtataattact 13347251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 42268936 - 42268836
Alignment:
Q  23 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 122  Q
    |||||| ||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| | |||||||||| || || |||| |||||||||||    
T  42268936 accaccacaaaaaccaccattaatcctcaccaaaaatcagaaccagccaccacgagcatcacca-cgaaaaccaacaccagccaccacgagcatcaccac 42268838  T
Q  123 ca 124  Q
    ||    
T  42268837 ca 42268836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 33404623 - 33404531
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 394  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  33404623 tcttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 33404531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 307 - 421
Target Start/End: Complemental strand, 41004031 - 41003918
Alignment:
Q  307 tacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatg 406  Q
    ||||| |||||  |||| || ||||||| ||||||| |||| |||||||| |||||||||||||||| |||| ||||||| || ||||||| ||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaaaatattg-aaaaagatataaaaagggatgatgatg 41003933  T
Q  407 tgatgtgaaattact 421  Q
    |||||| ||||||||    
T  41003932 tgatgtaaaattact 41003918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 27553560 - 27553441
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| |||||| |||| || |||| ||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||  ||||  |||||    
T  27553560 tcttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagaagaaaaatggtga 27553461  T
Q  402 tgatgtgatgtgaaattact 421  Q
    | || |||||| ||||||||    
T  27553460 ttatctgatgtaaaattact 27553441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 31800596 - 31800681
Alignment:
Q  336 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    ||||||| | ||||||||||| ||||| |||||||||| ||||||| || |||| ||||||||||||||| |||||| ||||||||    
T  31800596 cttttacacccacacacatttatgacacgtggcaaaaatattgaaagaaaagatgaaaaggggtgatgatatgatgtaaaattact 31800681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 40600035 - 40599972
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 77  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||||    
T  40600035 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaacaccagccaccacga 40599972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 12164255 - 12164339
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 386  Q
    |||||||||| ||||||||||| || || ||| ||||| |  |||||||||| ||||| ||||||||||||||||||||| ||||    
T  12164255 tcttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaaaacattgaaagaaga 12164339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 19596252 - 19596169
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagag 387  Q
    |||||||| ||||| ||||| || |||||||  ||||||   ||| |||||||||||||||||||||||||||||||| |||||    
T  19596252 ttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggcaaaaacattgaaagaagag 19596169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 26656639 - 26656790
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| ||||| ||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||          |||||||    
T  26656639 ctaccattgaccaccacaaaa-ccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca----------ccacaag 26656727  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 176  Q
    || ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26656728 caccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26656790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 26928226 - 26928377
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| ||||| ||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||          |||||||    
T  26928226 ctaccattgaccaccacaaaa-ccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca----------ccacaag 26928314  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 176  Q
    || ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26928315 caccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 7271718 - 7271792
Alignment:
Q  15 taccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccacca 89  Q
    ||||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| ||||||||||||    
T  7271718 taccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccacca 7271792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 6030564 - 6030500
Alignment:
Q  32 aaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  6030564 aaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 6030500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 7271788 - 7271851
Alignment:
Q  117 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 180  Q
    ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  7271788 caccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 7271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 19124657 - 19124540
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    ||||||||||  || |||||||||| |||||||  ||| || | |||||||| ||||||| ||||||||||||||| ||| ||||||| |||    ||||    
T  19124657 tcttatacatggactatcttagatggcatacaca-tttgacacccacacacaattgtgacgtgtggcaaaaacatt-aaagaagagatgaaagaatgtga 19124560  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  19124559 tgatatgatgtaaaattact 19124540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 41355772 - 41355620
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||   || ||||||| |||||||          |||||||    
T  41355772 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacacacaacaccacccaaaacca----------ccacaag 41355683  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 176  Q
    ||| |||||||| |||||| ||||||  |  |||| ||||||||  |||||||||||||||||    
T  41355682 cataaccaccaaaaaccactacgagccccgccacaaaagacccaaaatcagcaccaccatgaa 41355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 42221396 - 42221450
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccag 68  Q
    ||||||||||||||| |||||| |||| ||| || |||||||| |||||||||||    
T  42221396 ctaccattaaccaccacaaaaatcaccattactcgtcaccaaagaccagcaccag 42221450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 45873110 - 45873280
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||| |||||||||||||  ||||||||||| || || |||| ||    
T  45873110 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccaaacaccacgagcatcaccataaaaaaccaacaccagccaccacgag 45873209  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| ||||||||||| || || |||| |||||||| ||| | ||||||||||||||||||||    
T  45873210 catcaccaccaaaaaccaccacgaacaccaccacaaaagacccaatattaacaccaccatgaaaaccacca 45873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 55728704 - 55728871
Alignment:
Q  18 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 117  Q
    ||||||||||| ||||||||||| |||||||||||||||||| || ||||||||| || |||||||||||||||||| |||| |  || |||| ||||||    
T  55728704 cattaaccaccacaaaaaccaccattaatcctcaccaaaaactagtaccagccaccactagcatcaccaccaaaaactaacaccggccaccacgagcatc 55728803  T
Q  118 accaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||| ||| || ||||||||||| || |||| || |  |||||||| |||||||||| ||||||||||    
T  55728804 accatcaaaaatcaccacgagcaccaccacaaaaaattcagtatcaacaccaccatggaaaccaccac 55728871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 417
Target Start/End: Complemental strand, 45829444 - 45829329
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| |||||  |||| ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  45829444 tcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 45829345  T
Q  402 tgatgtgatgtgaaat 417  Q
    | ||||||||||||||    
T  45829344 taatgtgatgtgaaat 45829329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 46192363 - 46192478
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| || || ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  46192363 tcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 46192462  T
Q  402 tgatgtgatgtgaaat 417  Q
    | ||||||||||||||    
T  46192463 taatgtgatgtgaaat 46192478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 42677742 - 42677627
Alignment:
Q  20 ttaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcac 119  Q
    ||||||||| ||||||||||| ||||||||||| |||||| |||||||| ||| |||||||||||||||||||| ||||| || || |||||||||||||    
T  42677742 ttaaccaccacaaaaaccaccattaatcctcactaaaaacaagcaccagacaccacgagcatcaccaccaaaaatcaacaccagccaccacaagcatcac 42677643  T
Q  120 caccaagaaccaccac 135  Q
    | |||| |||||||||    
T  42677642 cgccaaaaaccaccac 42677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 12130522 - 12130633
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| || |||| |     
T  12130522 ctaccattgaccaccacaaaaactatcattaatcctcaccaaaaaccagcaccagccaccacgagcatcaccaccaaaacccaaaatcagccaccacgac 12130621  T
Q  114 catcaccaccaa 125  Q
    ||||||||||||    
T  12130622 catcaccaccaa 12130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 44275710 - 44275829
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| ||||| || |||| ||  |||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||    
T  44275710 tcttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaaaatattgaaagaagagattaaaaagggtga 44275809  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  44275810 tgatatgatgtaaaattact 44275829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 38093223 - 38093393
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||| |||||||| |||||| |||| | |||||||||||||||||| ||||| | || || |||||||||||||||||| |||| || || |||| ||    
T  38093223 ctaccaataaccaccacaaaaaacaccataaatcctcaccaaaaaccatcaccatctaccactagcatcaccaccaaaaactaacaccagccaccacgag 38093322  T
Q  114 catcaccacc-aagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 183  Q
    ||||||| || || |||||||||||| | || |||| || ||||||||||| |||||||||  ||||||||    
T  38093323 catcaccgccaaaaaaccaccacgagtaccaccacaaaaaacccagtatcaacaccaccatagaaaccacc 38093393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 3672278 - 3672397
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  3672278 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 3672377  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| ||||||  |||||||    
T  3672378 tgatatgatgtataattact 3672397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 6112634 - 6112753
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  6112634 tcttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 6112733  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  6112734 tgatatgatgtaaaattact 6112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 7217769 - 7217888
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| ||||| || ||||||| |||| || |  |||||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  7217769 tcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagataaaaaagggtga 7217868  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  7217869 tgatatgatgtaaaattact 7217888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 28093283 - 28093164
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||  |||||| |||| ||||||    
T  28093283 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 28093184  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||| ||||    
T  28093183 tgatatgatgtaaaaatact 28093164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 49243819 - 49243938
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  49243819 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaaaagtga 49243918  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  49243919 tgatatgatgtaaaattact 49243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 21391142 - 21391023
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| | ||||    
T  21391142 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaatgagtga 21391043  T
Q  402 tgatgtgatgtgaaattact 421  Q
      || |||||| ||||||||    
T  21391042 atatatgatgtaaaattact 21391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 35544916 - 35545035
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||||||||| ||  ||||||  ||||||   |||| |||||||||| | |||||||||||||||||| |||| || |||||||||||    
T  35544916 tcttatacatgaaccatcttaggtggtatacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaagatataaaaaggggtga 35545015  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  35545016 tgatatgatgtaaaattact 35545035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 51038811 - 51038887
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa-ggggtgatgatgtgatgtgaaattact 421  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||    
T  51038811 cacacacaattgtgacatgtgacaaaaacattgaaagaagagatgaaaagggggtgatggtgtgatgtgaaattact 51038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 14441123 - 14441174
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcac 65  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  14441123 ctaccattaaccagcacaaaaaccaccattaatcctcaccaaaaaccagcac 14441174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 47518712 - 47518552
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||  |||| ||||||| |||| || |||||||||| |||||||  |||||| |||||||          ||||||     
T  47518712 ctaccattgaccaccacaaaaatcactattaaccctcacctaaaagcaacaccagccaccacgagcagtaccacccaaaacca----------ccacaaa 47518623  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| ||||||||||||| | | |||| |||| |||  ||||||| ||||| |||||||||||    
T  47518622 catcaccaccaaaaaccaccacgagccttaccacaaaagatccaaaatcagcaacaccaagaaaaccacca 47518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 34227254 - 34227172
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| |||| | | ||||||||| |||| ||||||| |||| || |||||||||| ||| ||||||||||| |||||||    
T  34227254 ctaccattgaccatcacgaaaaccaccattaaccctcacctaaaagcaacaccagccaccacgcgcatcaccacccaaaacca 34227172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 23054411 - 23054338
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 180  Q
    ||||||||| ||||||||| ||||| |||||||  |  |||| ||||||||  |||||||||||||||||||||    
T  23054411 ccacaagcaccaccaccaaaaaccatcacgagctccgccacaaaagacccaaaatcagcaccaccatgaaaacc 23054338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 24957819 - 24957685
Alignment:
Q  33 aaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccac 132  Q
    |||| ||| |||| |||||||||||| || |||||||||| ||  |||||||||||||||||||          |||| |||| ||||  ||| || |||    
T  24957819 aaactaccattaaccctcaccaaaaaacaacaccagccaccacatgcatcaccaccaaaaacca----------ccacgagcaccaccgtcaaaaatcac 24957730  T
Q  133 cacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 177  Q
    |||||||| ||||||| |||| |||  ||||||||||||||||||    
T  24957729 cacgagcaccatcacaaaagaaccaaaatcagcaccaccatgaaa 24957685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 43245522 - 43245562
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttac 342  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttac 43245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 54849793 - 54849909
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 402  Q
    ||||||||| ||||| |||||||  | ||||| |||| |  | ||||| || |||||||| ||| |||||| ||||||| ||||||| | |  || ||||    
T  54849793 cttatacatgaaccaccttagatagcgtacacactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgat 54849892  T
Q  403 gatgtgatgtgaaatta 419  Q
    |||||||||||||||||    
T  54849893 gatgtgatgtgaaatta 54849909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 53202127 - 53202241
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||| ||| ||| ||| |||||||          |||||||    
T  53202127 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacgcgcagcac-acctaaaacca----------ccacaag 53202215  T
Q  114 catcaccaccaagaaccaccacgagc 139  Q
    |||||||||||| |||||||||||||    
T  53202216 catcaccaccaaaaaccaccacgagc 53202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 12489254 - 12489182
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 86  Q
    ||||||||||||||| |||||| |||| |||| | |||| |||  ||| ||||| |||| |||||||||||||    
T  12489254 ctaccattaaccaccacaaaaatcaccattaaccatcacaaaagtccaccaccacccaccacgagcatcacca 12489182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 23980137 - 23980254
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 23980236  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||||||||||||||    
T  23980237 atgtgatgtgaaattact 23980254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 21590682 - 21590510
Alignment:
Q  18 cattaaccaccccaaaaa-ccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 116  Q
    ||||||||||| |||||| ||||| ||| | ||||  |||||||| |||||| ||| |||||||||||||| |||||||||||||| || |||||||| |    
T  21590682 cattaaccaccacaaaaaaccaccattagttctcaaaaaaaaccaacaccagtcaccacgagcatcaccacaaaaaaccaacatcagccaccacaagcgt 21590583  T
Q  117 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaa 189  Q
    ||||| ||| |||||||||||||  || |||| |||||||| |||||||||||||||  |||| |||||||||    
T  21590582 caccatcaaaaaccaccacgagccccaccacaaaagacccaatatcagcaccaccatagaaactaccacaaaa 21590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 5811348 - 5811231
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| | ||| || ||||||  ||||| | | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 5811249  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||||||||||||||    
T  5811248 atgtgatgtgaaattact 5811231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 7700070 - 7699951
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700070 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7699971  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  7699970 tgatatgatataaaattact 7699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 7700268 - 7700149
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700268 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700169  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  7700168 tgatatgatataaaattact 7700149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 7700466 - 7700347
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700466 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700367  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  7700366 tgatatgatataaaattact 7700347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 7700664 - 7700545
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700664 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700565  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  7700564 tgatatgatataaaattact 7700545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 42221150 - 42221031
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || |||||||| |||||| | ||||||||||||||||| |||||||||||||||||| |||| || |||||||||||    
T  42221150 tcttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagatataaaaaggggtga 42221051  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  42221050 tgatatgatgttaaattact 42221031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 13108154 - 13108270
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| |||||  | ||||||| ||||||| | ||||||||||||||||||||||||||||| |||||| |||||| | |||||||||| |    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagaga-tgaaaggggtgagg 13108252  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||||||||||||||    
T  13108253 atgtgatgtgaaattact 13108270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31039008 - 31039129
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| || || |||  ||    
T  31039008 ctaccattaaccaccacaaaaaccaccattactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgag 31039107  T
Q  114 catcaccaccaagaaccaccac 135  Q
    ||||||||| || |||||||||    
T  31039108 catcaccactaaaaaccaccac 31039129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 31148296 - 31148413
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||||  ||||||||||||||||| ||||||| |||| ||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatgaaaatgggtgatg 31148395  T
Q  404 atgtgatgtgaaattact 421  Q
    || |||||| ||||||||    
T  31148396 atatgatgtaaaattact 31148413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 28307682 - 28307563
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||| | ||||| || ||||||| ||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| ||||||    
T  28307682 tcttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 28307583  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  28307582 tgatatgatgtaaaattact 28307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 36346751 - 36346633
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| ||||  |||||    
T  36346751 tcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa-aggtga 36346653  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  36346652 tgatatgatgtaaaattact 36346633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 21807509 - 21807390
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||| |||||||||||| ||||||| ||||||| |||| || |||    
T  21807509 tcttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatga 21807410  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||||| |||||||||||||    
T  21807409 tgatgttatgtgaaattact 21807390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 26972390 - 26972271
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||  |||||| |||| ||||||    
T  26972390 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 26972291  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  26972290 tgatatgatgtaaaattact 26972271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 34108430 - 34108549
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| |||||||||| ||||||| | |||||| ||||||||||| || |||||||||||||  ||||||| |||| ||||||    
T  34108430 tcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtga 34108529  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  34108530 tgatatgatgtaaaattact 34108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 424
Target Start/End: Original strand, 30887704 - 30887826
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||| ||||||| || ||||||| ||||||| | |||| |||||||||||| || ||||||||||||||  ||||||| |||| ||||||    
T  30887704 tcttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtga 30887803  T
Q  402 tgatgtgatgtgaaattacttaa 424  Q
    |||| |||||| |||||||||||    
T  30887804 tgatatgatgtaaaattacttaa 30887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 24718022 - 24718127
Alignment:
Q  23 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 122  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||   |||||||||| || || |||| |||||||||||    
T  24718022 accaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgagcatcacca-tgaaaaccaacaccaaccaccacgagcatcaccac 24718120  T
Q  123 caagaac 129  Q
    || ||||    
T  24718121 catgaac 24718127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 20086781 - 20086696
Alignment:
Q  336 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    ||||||| | |||| ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  20086781 cttttacacccacatacatttgagacatctggcaaaaacattaaaagaagagataaaaaggggtgatgatgtgatgtgaaattact 20086696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 46475075 - 46475147
Alignment:
Q  349 acacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  46475075 acacatttgtgacatgtaacaaaaacattgaaagaagagatgaaaaggggtgacgatgtgatgtgaaattact 46475147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 45782847 - 45782728
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| |||||  |||| || ||||||   |||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  45782847 tcttatacatcaaccactttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 45782748  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  45782747 tgatatgatgtaaaattact 45782728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 34828113 - 34828188
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||||||    
T  34828113 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtgatgatgatatgatgtaaaattact 34828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 38321014 - 38321132
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 402  Q
    ||||||||| ||||||||||| || |||||||  ||| || | |||| ||| ||||||||||||||||||||||||||| |||| || | | | ||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagaggaggtgat 38321113  T
Q  403 gatgtgatgtgaaattact 421  Q
    | |||||||||||| ||||    
T  38321114 ggtgtgatgtgaaagtact 38321132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 3302436 - 3302518
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| |||||| ||||||||||| ||||  ||||||||||| || |||||||||| ||| ||| |||||||||||||||    
T  3302436 ctaccattgaccaccacaaaaaccaccattaacactcaccaaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 3302518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 15020288 - 15020402
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| | ||| || ||||||  ||||||| | ||||  |||||||||||| ||||||||||||||||| ||||||   |||||||||| |    
T  15020288 ttatacataaaccaccataggtggcatacaaccttttacacccaca--catttgtgacatatggcaaaaacattgaaagaagaga-cgaaaggggtgaag 15020384  T
Q  404 atgtgatgtgaaattact 421  Q
    || |||||||||||||||    
T  15020385 atatgatgtgaaattact 15020402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 43047794 - 43047689
Alignment:
Q  18 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 117  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||| |||| ||| |||| | |||||||||| || || |||| ||||||    
T  43047794 cattaaccaccacaaaaaccaccattaatcctcacaaaaaatcagcaccaaccaccacgaacattacca-cgaaaaccaacaccagccaccacgagcatc 43047696  T
Q  118 accacca 124  Q
    | |||||    
T  43047695 atcacca 43047689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 42950156 - 42950113
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 389  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  42950156 cacacacatttgtgatatgtggcaaatacattgaaaaaagagat 42950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 36582839 - 36582894
Alignment:
Q  16 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||| |||| |||||    
T  36582839 accattaaccacca-aaaaaccaccagtaatcctcaccaaaaaccaacacccgccac 36582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 14022940 - 14023057
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgacaaggggtgacg 14023039  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||||||||||||||    
T  14023040 atgtgatgtgaaattact 14023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 24208450 - 24208567
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||||||||||| ||| ||  ||||||| |||||| | ||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||| |    
T  24208450 ttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaaaacattgaaagaagagatgaaaaagggtgagg 24208549  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||||||||||||||    
T  24208550 atgtgatgtgaaattact 24208567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 3987092 - 3986973
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||    
T  3987092 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagggatga 3986993  T
Q  402 tgatgtgatgtgaaattact 421  Q
    | || |||||| ||||||||    
T  3986992 taatatgatgtaaaattact 3986973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 32747760 - 32747641
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| |||  |||||||||||| |||||| |||||| || ||||||||||||||||||||||| || || |||  ||    
T  32747760 ctaccattaaccaccacaaaaaccaccattacacctcaccaaaaatcagcactagccaccaccagcatcaccaccaaaaaccaacaccagccaccatgag 32747661  T
Q  114 catcaccaccaagaaccacc 133  Q
    |||||||||||| |||||||    
T  32747660 catcaccaccaaaaaccacc 32747641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 13697573 - 13697691
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | || |||||||||||| | |||| ||||||||||||| ||||||| |||| ||||||    
T  13697573 tcttatacataaaccatcttagatgacatgcacccttttacac-catacacatttgtgatacgtggtaaaaacattgaaagaagagatgaaaacgggtga 13697671  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  13697672 tgatatgatataaaattact 13697691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 3118234 - 3118115
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    ||||||| || ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| |||| |||||     
T  3118234 tcttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagataaaaaagggtgg 3118135  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||  |||||| ||||||||    
T  3118134 tgacatgatgtaaaattact 3118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 15345844 - 15345727
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || |||| |||||||||| | || |||  ||||||||| |||||||||||||||||| || |||| ||||  |||||    
T  15345844 tcttatacatcaaccaccttaggtggcatatactcttttacacccataca--tttgtgacacgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 15345747  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  15345746 tgatatgatatcaaattact 15345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 30845463 - 30845542
Alignment:
Q  43 taatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 122  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||| ||||||| |||| || || |||| |||| ||||||    
T  30845463 taatcctcaccgaaaacaagcaccagccaacacgagcatcaccatcaaaaactaacaccagccaccacgagcaccaccac 30845542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 9566804 - 9566861
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    |||||||||||||||  ||||||||||  ||||||||||||||||||| |||| |||||    
T  9566804 ctaccattaaccacca-aaaaaccaccaataatcctcaccaaaaaccaacacccgccac 9566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 11366700 - 11366755
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagcc 70  Q
    |||||||||||||||  ||||||||||  | |||||||||||||||||||| |||||    
T  11366700 ctaccattaaccacca-aaaaaccaccaatgatcctcaccaaaaaccagcatcagcc 11366755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 21881411 - 21881479
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatga 175  Q
    ||||||||| ||||||||| ||||||||||||   ||  ||| ||||||||  ||||||||||||||||    
T  21881411 ccacaagcaccaccaccaaaaaccaccacgagtcccacaacaaaagacccaaaatcagcaccaccatga 21881479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 30432343 - 30432462
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| |||||||| ||||||| ||||||  | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  30432343 tcttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 30432442  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  30432443 tgatatgatgtaaaattact 30432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 12665348 - 12665468
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat-taaaaggggtg 400  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||  |||| |||||    
T  12665348 tcttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagataaaaaaagggtg 12665447  T
Q  401 atgatgtgatgtgaaattact 421  Q
    ||||| |||||| ||||||||    
T  12665448 atgatatgatgtaaaattact 12665468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 15050206 - 15050124
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  15050206 ctaccattaaccaccacaaaaaccatcattaatcctcaccaaaaactagcaccagccaccacgagcatcaccaccaaaaacca 15050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 42162602 - 42162721
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | || |||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  42162602 tcttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 42162701  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  42162702 tgatatgatgtaaaattact 42162721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 44081784 - 44081903
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||| ||| |||| ||||||||||||| ||||||| |||| ||||||    
T  44081784 tcttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtga 44081883  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| | |||| ||||||||    
T  44081884 tgatataatgtaaaattact 44081903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 33726017 - 33726135
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaag-gggtgat 402  Q
    ||||||||||||||  |||| || |||||||  |||||| | |||| ||||||||||||||||||||||||||||||| ||||||| ||||| || |||     
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaagtggatgac 33726116  T
Q  403 gatgtgatgtgaaattact 421  Q
    |||||||||||||||||||    
T  33726117 gatgtgatgtgaaattact 33726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 25142910 - 25143031
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| |||||| ||||  || |||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||| || || |||  ||    
T  25142910 ctaccattaaccaccacaaaaatcaccactactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaatcaacaccaaccaccatgag 25143009  T
Q  114 catcaccaccaagaaccaccac 135  Q
    |||||||||||| |||||||||    
T  25143010 catcaccaccaaaaaccaccac 25143031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 36189220 - 36189337
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | |||| |||||||||||| |||||||||| ||||||| ||||||| |||||| ||||    
T  36189220 tcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaggagtga 36189319  T
Q  402 tgatgtgatgtgaaatta 419  Q
    |||| |||| | ||||||    
T  36189320 tgatatgatataaaatta 36189337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 31318853 - 31318928
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |||||| ||||||||    
T  31318853 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattact 31318928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 10203668 - 10203787
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| |||||||||  |||||||   ||||||||||||||||| ||| |||||| ||||||| ||||||| |||| |||||     
T  10203668 tcttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaagggtgg 10203767  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  10203768 tgatatgatataaaattact 10203787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 23635861 - 23635931
Alignment:
Q  16 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 86  Q
    |||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  23635861 accattaacctccacaaaaaccaccattaatcctcaccaaaaatcagcaccagcctccacgagcatcacca 23635931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 15050170 - 15050070
Alignment:
Q  85 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||| | || || || |||| |||||||||||||| |||||||||||||| || |||| |||||| |||| ||||||||||||  |||||||||    
T  15050170 caccaaaaactagcaccagccaccacgagcatcaccaccaaaaaccaccacgagcaccaccacaaaagacctagtaccagcaccaccattgaaaccacca 15050071  T
Q  185 c 185  Q
    |    
T  15050070 c 15050070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 18184557 - 18184676
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    ||||||| || ||||| ||||  |||||||||| |||||||   |||||| |||||||||| ||||  |||||||||||  ||||||| |||||||||||    
T  18184557 tcttatatatgaaccaccttaagtgacatacacccttttacatccacacatatttgtgacacgtggtgaaaacattgaatgaagagatgaaaaggggtga 18184656  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  18184657 tgatatgatataaaattact 18184676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 43186031 - 43186150
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| |||||  |||| || |||| |||||||||| |   ||||||||||||| |||||||||||||||||||| || |||| ||||  |||||    
T  43186031 tcttatacatcaaccactttaggtggcatatactcttttacacctgcacacatttgtgatatgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 43186130  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||| | ||||||||    
T  43186131 tgatatgatataaaattact 43186150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 5515298 - 5515367
Alignment:
Q  23 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaa 92  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| |||| |||||||||| ||| ||||    
T  5515298 accaccacaaaaaccaccattaatcctcaccaaaaatcagcaccaaccaccacgagcatcatcacgaaaa 5515367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 38845165 - 38845091
Alignment:
Q  346 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 421  Q
    |||||||| ||||||||||||| ||||| ||||||| || |||| || |||||||||||||||||| |||||||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagat-aagaggggtgatgatgtgatgagaaattact 38845091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 10408713 - 10408793
Alignment:
Q  16 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||| |||||| ||||||||||| ||||  |||||| |||| || |||||||||| ||| ||| |||||||||||||||    
T  10408713 accattgaccaccacaaaaaccaccattaactctcacctaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 10408793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 31622 - 31547
Alignment:
Q  314 accatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 389  Q
    |||||||||| |  ||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| |||||||    
T  31622 accatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaagagat 31547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 5994493 - 5994575
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||  | ||||| |||| ||| ||| |||||| ||||||||    
T  5994493 ctaccattaaccaccacaaaaatcaccattaaccctcaccaaaaaataacaccaaccaccacgcgcagcaccacaaaaaacca 5994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 6443925 - 6444057
Alignment:
Q  42 ttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcat 141  Q
    |||| ||||| |||||| || || ||||||| | |||||||||||||||||||||          |||| |||| ||||||||| ||||||  ||||||     
T  6443925 ttaaccctcatcaaaaaacaacaacagccaccatgagcatcaccaccaaaaacca----------ccacgagcaccaccaccaa-aaccacttcgagcac 6444013  T
Q  142 catcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    || |||| ||||||||  |||||| |||||||||||||||||||    
T  6444014 caccacaaaagacccaaaatcagccccaccatgaaaaccaccac 6444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23635816 - 23635864
Alignment:
Q  19 attaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcacca 67  Q
    ||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  23635816 attaacctccacaaaaaccaccattaatcctcaccaaaaatcagcacca 23635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 42668951 - 42668850
Alignment:
Q  319 cttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 418  Q
    ||||| || ||||||| |||| || | |||||||| |||||||| |||||||||||||| ||| |||| | | | || ||||||| | ||||||||||||    
T  42668951 cttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaagata-tgagagaggtgatggtatgatgtgaaatt 42668853  T
Q  419 act 421  Q
    |||    
T  42668852 act 42668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 3763084 - 3763043
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaa 55  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  3763084 ctaccattaaccaccacaaaaaccatcattaatcctcaccaa 3763043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 46112131 - 46112012
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||||||||| ||||||||||  ||||||   |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  46112131 tcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtga 46112032  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  46112031 tgatatgatgtaaaattact 46112012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 21559565 - 21559684
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| |||| |    
T  21559565 tcttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaagggtaa 21559664  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  21559665 tgatatgatgtaaaattact 21559684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 36749410 - 36749529
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  36749410 tcttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 36749509  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  36749510 tgatatgatgtaaaattact 36749529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 39467286 - 39467169
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||||| |||||||||||||| |||||| ||||||| ||||||| ||||||||||| |    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatgaaaaggggtgagg 39467187  T
Q  404 atgtgatgtgaaattact 421  Q
    ||||||| ||||||||||    
T  39467186 atgtgatatgaaattact 39467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 34750085 - 34749966
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  34750085 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 34749986  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  34749985 tgatatgatgtaaaattact 34749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 36370525 - 36370406
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  36370525 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtga 36370426  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  36370425 tgatatgatgtaaaattact 36370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 43999993 - 44000112
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  43999993 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 44000092  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  44000093 tgatatgatgtaaaattact 44000112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 39072458 - 39072350
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 403  Q
    |||||||| || || |||||||||||||||| ||||||| | |||| ||||||||||||||||||| ||||||| ||| ||||||| |||| ||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggcataaacattaaaagaagagatgaaaatgggtgatg 39072359  T
Q  404 atgtgatgt 412  Q
    |||||||||    
T  39072358 atgtgatgt 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 22894684 - 22894803
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  22894684 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 22894783  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| ||||||  |||||||    
T  22894784 tgatatgatgtataattact 22894803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 31699226 - 31699333
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||| || || |||| ||    
T  31699226 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgagcatcacta-cgaaaaccaacaccagccaccacgag 31699324  T
Q  114 catcaccac 122  Q
    || ||||||    
T  31699325 caccaccac 31699333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 51339968 - 51339851
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||||||||| ||||| || ||||||  ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  51339968 tcttatacataaaccaccttaggtggcatacatccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 51339871  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  51339870 tgatatgatgtaaaattact 51339851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 30735682 - 30735564
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    ||||||| || ||||| |||||||| ||||||| ||||||| | ||||||||| ||||||| |||||||||||||||||| |||| | ||||| ||||||    
T  30735682 tcttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaagata-taaaaagggtga 30735584  T
Q  402 tgatgtgatgtgaaattact 421  Q
    |||| |||||| ||||||||    
T  30735583 tgatatgatgttaaattact 30735564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 29460664 - 29460756
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 394  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29460664 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29460756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 29471516 - 29471608
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 394  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29471516 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 38231297 - 38231381
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 386  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  38231297 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaaga 38231381  T

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Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 37067076 - 37067129
Alignment:
Q  248 accccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcgg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37067076 accccaaccataattcttgcaaagtaacccatgttttgtagctccagctggcgg 37067129  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 306 - 421
Target Start/End: Complemental strand, 20856334 - 20856221
Alignment:
Q  306 atacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgat 405  Q
    |||||| |||||  |||| || ||||||| ||||||| | || ||||||||||||||||||||||||||||||| |||||| | ||||| || |||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattga-aaaagata-taaaaaggatgatgat 20856237  T
Q  406 gtgatgtgaaattact 421  Q
    ||||| | ||||||||    
T  20856236 gtgatataaaattact 20856221  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 18269954 - 18269875
Alignment:
Q  17 ccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  18269954 ccattgaccaccacaaaaaccaccattaaccatcactaaaaaacaacaccagccaccacgcgcatcaccaccaaaaacca 18269875  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 53638165 - 53638255
Alignment:
Q  328 catacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 418  Q
    ||||||| |||| || | |||||||| | ||||||||||| |||||||| |||| ||||||| | | |||||||||||||||||| |||||    
T  53638165 catacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgtgatgtaaaatt 53638255  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 31699315 - 31699373
Alignment:
Q  129 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 187  Q
    |||||||||||| || |||| |||||||| || || |||||||||| ||||||||||||    
T  31699315 ccaccacgagcaccaccacaaaagacccaataccaacaccaccatggaaaccaccacaa 31699373  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 29820483 - 29820390
Alignment:
Q  305 tatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg 398  Q
    |||||||| |||| ||||| || ||||||| |||| || | |||| ||| |||||| |||| ||||||||||| ||| ||||||| | ||||||    
T  29820483 tatacatagaccaccttaggtggcatacacactttgacacccacatacaattgtgagatgtagcaaaaacattaaaagaagagatgagaagggg 29820390  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 18269863 - 18269807
Alignment:
Q  128 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    ||||||||||||  || |||| ||||||||  |||| ||||||||||||||||||||    
T  18269863 accaccacgagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccacca 18269807  T

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Target: scaffold0062 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 302 - 424
Target Start/End: Original strand, 6722 - 6844
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 401  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 6821  T
Q  402 tgatgtgatgtgaaattacttaa 424  Q
    |||| |||||| |||||||||||    
T  6822 tgatatgatgtaaaattacttaa 6844  T

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Target: scaffold0092 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 23272 - 23348
Alignment:
Q  112 agcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||||||| ||||| |||||||||||||| || |||| |||||| |||||||||||||||||| |||||||||||||    
T  23272 agcatcacaaccaaaaaccaccacgagcaccaccacaaaagacctagtatcagcaccaccatggaaaccaccacaaa 23348  T

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Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 87350 - 87259
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 394  Q
    |||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacac-cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 87259  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 2946 - 3021
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaa 90  Q
    ||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||| |||| |||||| ||||||||||    
T  2946 ctaccattaaccaccacaaaatc-accattactcctcaccaaaaaccagcaccaaccaccacgagcttcaccaccaa 3021  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 42912 - 42826
Alignment:
Q  77 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 163  Q
    |||||||||||||||||| |||| |||||  |||  |||||||| |||| |||||||||||| | || |||| || ||| |||||||    
T  42912 agcatcaccaccaaaaactaacaccatccatcacgcgcatcaccgccaaaaaccaccacgagtaccaccacaaaaaacctagtatca 42826  T

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Target: scaffold0725 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 1080 - 1121
Alignment:
Q  31 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  1080 aaaaaccaccagtaatcctcaccaaaaaccagcacccgccac 1121  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 26996 - 27037
Alignment:
Q  31 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  26996 aaaaaccaccagtaatcctcaccaaaaaccagcacccgccac 27037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 31223 - 31295
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 86  Q
    ||||||||||||||| |||||| |||| |||| | |||| |||  ||| ||||| |||| |||||||||||||    
T  31223 ctaccattaaccaccacaaaaatcaccattaaccatcacaaaagtccaccaccacccaccacgagcatcacca 31295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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