View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17935_low_4 (Length: 533)

Name: NF17935_low_4
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17935_low_4
NF17935_low_4
[»] chr1 (4 HSPs)
chr1 (162-369)||(44715965-44716170)
chr1 (17-101)||(44716235-44716319)
chr1 (465-516)||(44715818-44715869)
chr1 (36-101)||(9659199-9659264)
[»] chr4 (1 HSPs)
chr4 (20-101)||(21429312-21429393)
[»] chr3 (3 HSPs)
chr3 (36-104)||(48342042-48342110)
chr3 (35-99)||(3755591-3755655)
chr3 (53-97)||(32522018-32522062)
[»] chr6 (2 HSPs)
chr6 (38-101)||(11142631-11142694)
chr6 (26-104)||(32157183-32157261)
[»] chr8 (1 HSPs)
chr8 (20-101)||(3418532-3418613)
[»] chr5 (3 HSPs)
chr5 (36-104)||(7616943-7617011)
chr5 (20-100)||(14588637-14588717)
chr5 (36-104)||(21375374-21375442)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 162 - 369
Target Start/End: Complemental strand, 44716170 - 44715965
Alignment:
Q  162 tttcacacgaattcaatcagatcttgcaaactaaatctttttagagatgatttaagaacaatcttataaaagtgacacactacttcatcaaaatatatgt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44716170 tttcacacgaattcaatcagatcttgcaaactaaatctttttagagatgatttaagaacaatcttataaaagtgacacactacttcatcaaaatatatgt 44716071  T
Q  262 ttctctcacttttatataatatactacagattatataactcgtcatagataattgaattatatttcttaatatactcgtaaaagatttaaatgcaatatt 361  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44716070 ttctctcacttttatataatatactacagat--tataactcgtcatagataattgaattatatttcttaatatactcgtaaaagatttaaatgcaatatt 44715973  T
Q  362 ctttattc 369  Q
    ||| ||||    
T  44715972 cttgattc 44715965  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 44716319 - 44716235
Alignment:
Q  17 atcggttcgatttttagaaggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtgg 101  Q
    |||||| |||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  44716319 atcggtccgatttttagaaagaacaacgtttgactagtgcgcatgcctttatgcatgagtcagattagtcgtccatttttggtgg 44716235  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 465 - 516
Target Start/End: Complemental strand, 44715869 - 44715818
Alignment:
Q  465 tgaacctgctacaaagtctacaacatgtatgggacccttttcaccaaacaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44715869 tgaacctgctacaaagtctacaacatgtatgggacccttttcaccaaacaat 44715818  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 9659264 - 9659199
Alignment:
Q  36 ggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtgg 101  Q
    |||||||||||| ||||||||||||| ||| | ||||||| | ||||||||||||| |||||||||    
T  9659264 ggaacaacgtttgactagtgcgcatgcctttacgcatgagccggattagtcgtccacctttggtgg 9659199  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 21429312 - 21429393
Alignment:
Q  20 ggttcgatttttagaaggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtgg 101  Q
    ||||||||||||||  ||||||||||||| | |||||||||| ||  | ||| |||||||| |||||||||| |||||||||    
T  21429312 ggttcgatttttagggggaacaacgtttagccagtgcgcatgcctctacgcacgagtcagactagtcgtccacctttggtgg 21429393  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 48342042 - 48342110
Alignment:
Q  36 ggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtggatc 104  Q
    ||||||||| ||  |||||||||||| ||  | ||||||  ||||||||||||||||||||||||||||    
T  48342042 ggaacaacgcttggctagtgcgcatgcctctacgcatgaaccagattagtcgtccatctttggtggatc 48342110  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 3755591 - 3755655
Alignment:
Q  35 aggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggt 99  Q
    ||||||||||||| || |||||||||||||  | ||||||| | ||||||||||| | |||||||    
T  3755591 aggaacaacgtttgaccagtgcgcatgtctctacgcatgagccggattagtcgtctacctttggt 3755655  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 32522018 - 32522062
Alignment:
Q  53 gtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttg 97  Q
    |||||||||| || | ||||||||||||||||||||||| |||||    
T  32522018 gtgcgcatgtatttacgcatgagtcagattagtcgtccacctttg 32522062  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 11142631 - 11142694
Alignment:
Q  38 aacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtgg 101  Q
    |||||||||| || |||||||||| ||  | ||||||||||||||||| ||||| |||||||||    
T  11142631 aacaacgtttgaccagtgcgcatgcctctacgcatgagtcagattagttgtccaactttggtgg 11142694  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 32157261 - 32157183
Alignment:
Q  26 atttttagaaggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtggatc 104  Q
    ||||||||| ||||||||  || || |||||||||  ||  | ||||||| |||||||||| |||||||||||||||||    
T  32157261 atttttagagggaacaacacttgaccagtgcgcatacctctacgcatgagccagattagtcatccatctttggtggatc 32157183  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 3418613 - 3418532
Alignment:
Q  20 ggttcgatttttagaaggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtgg 101  Q
    |||||||||||||| |||||||||  ||  | ||||||||||  |  | ||||||||||||||||||||||| |||| ||||    
T  3418613 ggttcgatttttaggaggaacaacacttggccagtgcgcatgcgtctacgcatgagtcagattagtcgtccacctttagtgg 3418532  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 7616943 - 7617011
Alignment:
Q  36 ggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtggatc 104  Q
    |||||||||||| || |||  ||||| ||  | ||||||||||||||||||||||||  ||||||||||    
T  7616943 ggaacaacgtttgaccagtatgcatgcctctacgcatgagtcagattagtcgtccattattggtggatc 7617011  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 14588717 - 14588637
Alignment:
Q  20 ggttcgatttttagaaggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtg 100  Q
    ||||||||||| || ||||| |||| || || |||||||||| ||  | ||||||| | ||||||||||||| ||||||||    
T  14588717 ggttcgattttcaggaggaataacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtg 14588637  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 21375374 - 21375442
Alignment:
Q  36 ggaacaacgtttaactagtgcgcatgtcttaatgcatgagtcagattagtcgtccatctttggtggatc 104  Q
    |||||||| ||| || ||||||||||  |  | ||||||||| ||||||||||||||||||| ||||||    
T  21375374 ggaacaacatttgaccagtgcgcatgcttctacgcatgagtcggattagtcgtccatctttgatggatc 21375442  T

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