View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17935_low_5 (Length: 469)
Name: NF17935_low_5
Description: NF17935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17935_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 1615783 - 1615349
Alignment:
| Q |
19 |
aatccagttgcagcttagcggcttttattctactaattgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttg |
118 |
Q |
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| T |
1615783 |
aatccagttgcagcttagcggcttttattctactatttgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttg |
1615684 |
T |
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| Q |
119 |
tttgtattgaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcagagtatcaaa |
218 |
Q |
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| T |
1615683 |
tttgtattgaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcagagtatcaaa |
1615584 |
T |
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| Q |
219 |
atcaagtactgtttgatgggaaaaaatcttacttgatgtcacagtcactgtagttgcaggttgcaatcttatgttattttttcccccttattgtatggat |
318 |
Q |
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| T |
1615583 |
atcaagtattgtttgatgggaaaaaatcttac--gatgtcacagtcactgtggttgcaggttgcaatcttatgttattttttcccccttattttatggat |
1615486 |
T |
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| Q |
319 |
ggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatgaaaattggacaggtttcttttccctccacgtat |
418 |
Q |
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| T |
1615485 |
ggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgatgagaagatgaaaattggacaggtttcttttccctccacgtat |
1615386 |
T |
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| Q |
419 |
ttatttttgttgttatgatttcatttttgatcatttt |
455 |
Q |
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| T |
1615385 |
ttatttttgttgttatgatttcatttttgatcatttt |
1615349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 154 - 455
Target Start/End: Original strand, 24455046 - 24455341
Alignment:
| Q |
154 |
acagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagcag-agtatcaaaatcaagtactgtttgatgggaaaaaatcttactt |
252 |
Q |
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| T |
24455046 |
acagtttagttttctattttaaacaaatttaacaccaccaacataggatgaagcaggagtatcaaaatcaagttttgtttgatgggaaaaaatcttactt |
24455145 |
T |
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| Q |
253 |
gatgtcacagtcactgtagttgcaggttgcaatcttatgttattttttccc--ccttattgtatggatggtggtgtggctaggtttgaa-ttcatacgct |
349 |
Q |
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| T |
24455146 |
ta-----------ctgtggttgcaggttgcaatcttatgtttttttttttcttccgtattttatggatggtggtgtggctagatttgaaattcatacgct |
24455234 |
T |
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| Q |
350 |
gaagatgatgaagagtgatgctttgacgagaagatgaaaattggacaggtttcttttccctccacgtatttatttttgttgttatgatttc-atttttga |
448 |
Q |
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| T |
24455235 |
gaagatgatgaagagtgatgcttttatgagaagatgaaatttggacaggtttcttttccctccacatatttctttttgttgttatgatttcgttttttga |
24455334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 43227403 - 43227489
Alignment:
| Q |
287 |
ttatgttattttttcccccttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttga |
375 |
Q |
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| T |
43227403 |
ttatgttatttttttcc--ttattttatggatggtggtgtggctaggtttgaattcatacgttgaagatgacaaagagtgatgctttga |
43227489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 48909326 - 48909245
Alignment:
| Q |
305 |
cttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatga |
386 |
Q |
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| T |
48909326 |
cttattttatggatggtggtcttgctaggcttgagttcaaatgttgaagatgatggagagtgaggctttgatgagaagatga |
48909245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 35361119 - 35361052
Alignment:
| Q |
315 |
ggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaag |
382 |
Q |
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| T |
35361119 |
ggatggtggtgtggctctatttgagttcataggttgaagatgatgaagagtgagactttgatgagaag |
35361052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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