View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17936_high_3 (Length: 483)
Name: NF17936_high_3
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 12772628 - 12772977
Alignment:
| Q |
17 |
atcatctcggatctttagaatatgtgattgcatgcgtaatttgttgattgtagaaannnnnnnaaaccttaaatgaatgt--tttatgtggtgtcttaaa |
114 |
Q |
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| T |
12772628 |
atcatatcggatctttagaatatgtgattgcatgggtaatttgttgattgtagaaattgttttaaaccttaaatggatgtgttttatgtggtgtcttaaa |
12772727 |
T |
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| Q |
115 |
ccaaaatgacatcaaattagacagcaatcttaattactaatcaaggaaatttgactattttataattgtggtcaaggaaatttgaattttgtccttgaag |
214 |
Q |
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| T |
12772728 |
ccaaaatgacatcaaattagacagcaatcttaattactaatcaaggaaatttgactattttataattgtggtcaaggaaatttgaattttgtccttgaag |
12772827 |
T |
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| Q |
215 |
cttaaagtccaaa-ccttaccccggtgtttaatttgttaaacataattcagtgaaaaatatgttacaaaaacaattagcctctcctctatttcaagaagt |
313 |
Q |
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| T |
12772828 |
cttaaagtccaaacccttaccacggtgtttaatttgttaaacataattcagtgaaaaatatgttacaaaaacaattagcctctcctctatttcaagaagt |
12772927 |
T |
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| Q |
314 |
tagtctatgnnnnnnntagaagataaatatgaaaaataaattgagtgttg |
363 |
Q |
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| T |
12772928 |
tagtctatgaaaaaaatataagataaatatgaaaaataaattgagtgttg |
12772977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 330 - 438
Target Start/End: Original strand, 12773001 - 12773115
Alignment:
| Q |
330 |
tagaagataaatatgaaaaataaattgagtgttg-------cctctttaaatgtcaagagtaatacatggtacatatcagaataccatagtataaattca |
422 |
Q |
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| T |
12773001 |
tagaagataaatatgaaaattaaattgagtgttgggggttgcctccttaaatgtcaagagtgatacatggtacatatcagaataccatagtat-aattca |
12773099 |
T |
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| Q |
423 |
aactagcctttatcaa |
438 |
Q |
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| T |
12773100 |
aactagcctttatcaa |
12773115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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