View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17936_high_8 (Length: 231)
Name: NF17936_high_8
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 32213474 - 32213637
Alignment:
| Q |
57 |
attataaacaagaacaatcgagtttctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagca |
156 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32213474 |
attattaacaagaacaatcgagtttctatgttcacgacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagca |
32213573 |
T |
|
| Q |
157 |
ccctaacatattaggtttagttcattatacttaagcttacttggcagttcttgattggttgatg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32213574 |
ccctaacatattaggtttagttcattatacttaagctgacttggcagttcttgattggttgatg |
32213637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32212902 - 32212941
Alignment:
| Q |
1 |
aagaataagttagtttctacaggatcgtttaatttctaca |
40 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
32212902 |
aagaataagttggtttctacagggtcgtttaatttctaca |
32212941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 25228235 - 25228291
Alignment:
| Q |
76 |
gagtttctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaa |
133 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
25228235 |
gagtttctatgt-cacgacaatttaacaaaatagatcaagaccaatgtcttggcttaa |
25228291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 19995942 - 19996004
Alignment:
| Q |
100 |
aacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagcaccctaa |
162 |
Q |
| |
|
||||||||||| |||||||||| |||||| | ||||||| ||||||||||| || ||||||| |
|
|
| T |
19995942 |
aacaaaataaatcaagaccaatttcttggttgaatgtcctatttatctaatatagaaccctaa |
19996004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University