View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17936_low_1 (Length: 731)
Name: NF17936_low_1
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 228 - 724
Target Start/End: Original strand, 40659606 - 40660105
Alignment:
| Q |
228 |
gagttgcacttacgagacgtccaaacaaacccacatgatttgataatacacttaacttgaaggtgtagataagttccttaccctaactcttgatgatcaa |
327 |
Q |
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| T |
40659606 |
gagttgcacttacgagacgtccaaacaaatccacgtgatttgataacacacttaacttgaaggtgtagataagttccttaccctaactcttgatgatcaa |
40659705 |
T |
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| Q |
328 |
aattatgttaatataacaacaatacatgcatctgacatggtcccatatattcatgagattatgagaagataataataactgacatgacacctataaaagg |
427 |
Q |
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| T |
40659706 |
aattatgttaagataacaacaatacatgcatctgacatggtcccatatattcatgagattatgagaagataataataactgacatgacacctataaaagg |
40659805 |
T |
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| Q |
428 |
ttttcaaaaaactcacgacacaagctttccacgtctttgctgtcgagacaagagacaacgtactaagataagaagaaaataatggctgactactagaaat |
527 |
Q |
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| T |
40659806 |
ttttcaaaaaactcacgacacaagctctccacgtctttgctgtcgagacaagagacaacgtactcagataagaagaaaataatggctgactactagaatt |
40659905 |
T |
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| Q |
528 |
tgtccttttcccatcataaatttttctattatagcattttcatttccctgtgaaattgtgactgaatagaatatggcatccttgttattgagaaggtcta |
627 |
Q |
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| T |
40659906 |
tgtccttttcccatcataaatttttctattatagcattttcatttccctgtgaaattttgactgaatagaatatggcatccttgttattgagaaggtcta |
40660005 |
T |
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| Q |
628 |
agacc---ttagttcctaatcaccagcaccttcaaagtaagctagctagcttgttgctaggatcaggatcaacattcatcaaccaccactcttcttctca |
724 |
Q |
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| T |
40660006 |
agaccttattagttcctaatcaccagcaccttcaaagtaagctagctagcttgttactaggatcaggatcaacattcatcaaccgccactcttcttctca |
40660105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 40659385 - 40659534
Alignment:
| Q |
18 |
attaatttcaacaataagaagctagcgcacatggatttatattgttttaaagagtttaataataaaacttacgattccct----nnnnnnnncttaagat |
113 |
Q |
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| T |
40659385 |
attaatttcaacaataagaagctagcacacatggatttatattgttttaaagagtttaataataaaacttacgattccctaaaaaaaaaaaacttacgat |
40659484 |
T |
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| Q |
114 |
aaacaacaaattcactttacaacgtattaaatatttgtctttttctgacc |
163 |
Q |
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| T |
40659485 |
aaacaacaaattcactttacaacgtatcaaatatttgtccttttctgacc |
40659534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 40658202 - 40658263
Alignment:
| Q |
340 |
ataacaacaatacatgcatctgacatggtcccatatattcatgagattatgagaagataataa |
402 |
Q |
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| T |
40658202 |
ataacaacaatacatgggtctgacgtggtcccatat-cccatgagattatgagaagataataa |
40658263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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