View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17936_low_4 (Length: 465)
Name: NF17936_low_4
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 450
Target Start/End: Original strand, 5395118 - 5395556
Alignment:
| Q |
12 |
gaacctgtggcgaaaacttgtaccactctttgttggagtaacactttcttcatgacatgatcctaaggaagaatcaacgttatatttgtacctaacactt |
111 |
Q |
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| T |
5395118 |
gaacctatggcgaaaacttgtaccactctttgttggagtaacactttcttcatgacatgatcctaaggaagaatcaacgttatatttgtacctaacactt |
5395217 |
T |
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| Q |
112 |
tcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctcttccacctctttgtattttactgttttcatcaaccggaacaa |
211 |
Q |
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| T |
5395218 |
tcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctcttccacctctttgtattttactgttttcatcaactggaacaa |
5395317 |
T |
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| Q |
212 |
aatgaaaacttgcggaacgttctgaattcaagacactattgctttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctg |
311 |
Q |
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| T |
5395318 |
aatgaaaactcgcggaacgttctgaattcaagacactattgctttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctg |
5395417 |
T |
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| Q |
312 |
aagaaacttcttcatgcaactaagctctttctcaaggctttgaatacgtgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtg |
411 |
Q |
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| T |
5395418 |
aagaaacttcttcatgcaactaagctctttctcaaggctttgaatacgcgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtg |
5395517 |
T |
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| Q |
412 |
gtgtcgagttggagaaattctctaagtgaggttcgttgt |
450 |
Q |
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| T |
5395518 |
gtgtcgagttggagaaattctctaagtgaggttcgttgt |
5395556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 5394536 - 5394596
Alignment:
| Q |
110 |
tttcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctct |
170 |
Q |
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| T |
5394536 |
tttcattgtttttcttgatcatgttatcaagcaaaaaaccaaaggacgaaacagagtctct |
5394596 |
T |
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