View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17936_low_6 (Length: 425)
Name: NF17936_low_6
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Complemental strand, 34554245 - 34553858
Alignment:
| Q |
20 |
aaaagattgagatgcaaaatcttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgc |
119 |
Q |
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| T |
34554245 |
aaaagattgagatgcaaaatcttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgc |
34554146 |
T |
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| Q |
120 |
atgtataaagctggtgaggcaaataaacttttaaacgatataaagagaggtctatctcgtcagctttttgagtagttgccatggaaactattgaactaac |
219 |
Q |
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| T |
34554145 |
atgtataaagctggtgaggcaaataaacttttaaacgatataaagagaggtctatctcgtaaactttttgagtagttgccatggaaactattgaactaac |
34554046 |
T |
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| Q |
220 |
caagtgagggatataagagttgttgaggatagagaaggaaagtcttttgatgcattttgattccctttgagataggacactgttcataatatcaacaaag |
319 |
Q |
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| T |
34554045 |
caagtgagggatataacagttgttgaggatagagaaggaaagtcttttgatgcattttgattccctttgagataggacactgttcataatatcaacaaag |
34553946 |
T |
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| Q |
320 |
ttctcttttgttggaaaggaaggacaatgatttgggaaatgaagagcatcagcaaaagtccaaagtgaaatccacctatgggataaaa |
407 |
Q |
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| T |
34553945 |
ttctcttttgttagaaaggaaggacaatgatttgggaaatgaagagcatcagcaaaagtccaaagtgaaatccacctatgggataaaa |
34553858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 36283501 - 36283198
Alignment:
| Q |
31 |
atgcaaaatcttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgcatgtataaagc |
130 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| || || | |||| ||||||||||| |||||||| |||||||| ||| | ||| | |
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| T |
36283501 |
atgcaaaatcttcagcaaaggaagatgaagatgagaaggaaggttcaggtaaaatctcccaaccaacttcaaaacaacgagtgtttcgcaagcgaaaatc |
36283402 |
T |
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| Q |
131 |
tggtgaggcaaataaacttttaaacgatataaagagaggtctatctcgtcagctttttgagtagttgccatggaaactattgaactaaccaagtgaggga |
230 |
Q |
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| |||||||||||||||||||| ||||||||| || |||||||| ||| ||||||| || |||||||| |||||||||||||||||||||| |||| |
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| T |
36283401 |
tcacaaggcaaataaacttttaaactatataaagaaagatctatctcctcaactttttgtttacttgccatgcaaactattgaactaaccaagtgtggga |
36283302 |
T |
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| Q |
231 |
tataagagttgttgaggatagagaaggaaagtcttttgatgcattttgattccctttgagataggacactgttcataatatcaacaaagttctcttttgt |
330 |
Q |
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||||| |||| ||| |||||||||| |||| |||||| || || ||| || ||||||| || |||||| |||| ||| | ||||||||| | | |||| |
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| T |
36283301 |
tataacagttattgtggatagagaatgaaactcttttcatacaacttggttttctttgagctaagacacttttcacaatttgaacaaagttatttcttgt |
36283202 |
T |
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| Q |
331 |
tgga |
334 |
Q |
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|||| |
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| T |
36283201 |
tgga |
36283198 |
T |
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