View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17936_low_7 (Length: 358)

Name: NF17936_low_7
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17936_low_7
NF17936_low_7
[»] chr2 (3 HSPs)
chr2 (1-355)||(12772292-12772657)
chr2 (78-219)||(9127802-9127943)
chr2 (123-222)||(9760566-9760665)
[»] chr1 (1 HSPs)
chr1 (78-251)||(42485909-42486082)
[»] chr8 (1 HSPs)
chr8 (87-232)||(42743023-42743168)
[»] chr3 (1 HSPs)
chr3 (78-251)||(49198536-49198709)
[»] chr7 (4 HSPs)
chr7 (78-245)||(35674999-35675166)
chr7 (82-232)||(9903135-9903284)
chr7 (87-222)||(22621783-22621918)
chr7 (79-222)||(761699-761839)
[»] chr4 (2 HSPs)
chr4 (78-251)||(22157756-22157929)
chr4 (79-251)||(41487987-41488163)
[»] chr5 (1 HSPs)
chr5 (98-227)||(35280868-35280997)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 12772657 - 12772292
Alignment:
Q  1 caatcacatattctaaagatccgatatgatggacatttcaaactttgtaaatcgagtctaaattataattatgaaatagagcgatcctatatagtatgaa 100  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12772657 caatcacatattctaaagatccgatatgatccacatttcaaactttgtaaatcgagtctaaattataattatgaaatagagcgatgctatatagtatgaa 12772558  T
Q  101 agaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtttgctgaaaaaacgtaaatcaaga 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||    
T  12772557 agaaaacatagcaaaagcttcccgaatcaaaactaaccaatcacaatttgttgtttagcagaatacaaggaggtgtttgctgaaaaaacgtaaatcaaga 12772458  T
Q  201 aataaacctccaatcaaaactaaccagctattatcctggtctattcc-----------cttgcgagaaaaaacatttccctatgaaatatgagtcgttca 289  Q
    |||||| ||||||||||||||| || ||||||||| ||| |||||||           |||| ||||||||  |||||||||||||||||||||||||||    
T  12772457 aataaatctccaatcaaaactagccggctattatcttggcctattcccttgacattctcttgtgagaaaaagtatttccctatgaaatatgagtcgttca 12772358  T
Q  290 atattgatccaattattcaaagtaattcattgattgtgtgaatacaagaaatttaagtccattcat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  12772357 atattgatccaattattcaaagtaattcattgattgtgtgaatacaggagatttaagtccattcat 12772292  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 9127943 - 9127802
Alignment:
Q  78 agagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtt 177  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||  | || |||||||||||    
T  9127943 agagcgatgctatatagtgtgaaagaaaacatagcgaaagcatcccgaatcaaaactaaccaatcacaatttgttgtttggcaaaatacaaggaggtgtt 9127844  T
Q  178 tgctgaaaaaacgtaaatcaagaaataaacctccaatcaaaa 219  Q
    | | ||||||||  || |||||||||||||||||||| ||||    
T  9127843 tacggaaaaaacagaagtcaagaaataaacctccaattaaaa 9127802  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 9760665 - 9760566
Alignment:
Q  123 cgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtttgctgaaaaaacgtaaatcaagaaataaacctccaatcaaaacta 222  Q
    |||||||||||||||||||||||||||||||||| ||  | || |||||||||||| | ||||||||  || |||||||||||||||| ||| |||||||    
T  9760665 cgaatcaaaactaaccaatcacaatttgctgtttggcaaaatacaaggaggtgtttacggaaaaaacagaagtcaagaaataaacctcaaattaaaacta 9760566  T

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Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 42486082 - 42485909
Alignment:
Q  78 agagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtt 177  Q
    |||||||| ||||||||| |||||||||||| | ||||| ||||| ||| ||||||||| |||||| | |||| ||||| ||||| || |||||||||||    
T  42486082 agagcgatgctatatagtgtgaaagaaaacacaacgaaaacttcctgaaccaaaactaatcaatcatagtttgatgtttggcggaatacaaggaggtgtt 42485983  T
Q  178 tgctgaaaaaacgtaaatcaagaaataaacctccaatcaaaactaaccagctattatcctggtctattcccttg 251  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  42485982 tgctgaaaaaacagaaattaagaaataaacctccaatcaaaactaaccagctattgtcgtggtctattcgcttg 42485909  T

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Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 42743168 - 42743023
Alignment:
Q  87 ctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtttgctgaaaa 186  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||||| || |||||||||||||| |||||    
T  42743168 ctatatagtgtgaaagaatacatagcgaaagcatcccgaatcaaaactaactaatcacagtttgctgtttggcggaatacaaggaggtgtttgcggaaaa 42743069  T
Q  187 aacgtaaatcaagaaataaacctccaatcaaaactaaccagctatt 232  Q
    |||| ||||||| |||||||||||| ||||||||||  ||||||||    
T  42743068 aacggaaatcaataaataaacctcccatcaaaactatacagctatt 42743023  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 49198536 - 49198709
Alignment:
Q  78 agagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgttt---agcggattataaggaggt 174  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||| |||| |||||    ||||| || ||||||||    
T  49198536 agagcgatcctatatagtgtgaaagaaaacatagcgaaagcttcccgaaccaaaactaactaattacagtttgatgtttggcggcggaatacaaggaggt 49198635  T
Q  175 gtttgctgaaaaaacgtaaatcaagaaataaacctccaatcaaaactaaccagctattatcctggtctattcccttg 251  Q
    | |||||||||||||  ||||   ||||||||||||||||||||||||||||| |||| || |||||||||| ||||    
T  49198636 gcttgctgaaaaaacagaaat---gaaataaacctccaatcaaaactaaccagatattgtcgtggtctattcgcttg 49198709  T

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Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 35674999 - 35675166
Alignment:
Q  78 agagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtt 177  Q
    ||||||||  |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  | || |||||||||||    
T  35674999 agagcgatggtatatagtgtgaaagaaaacatagcgaaagcatcccgaatcaaaactaaccaatcacaatttgctgtttggcaaaatacaaggaggtgtt 35675098  T
Q  178 tgctgaaaaaacgtaaatcaagaaataaacctccaatcaaaactaaccagctattatcctggtctatt 245  Q
    | | ||||||||  || |||||||||||||||||||| | ||||| || |||||| || |||| ||||    
T  35675099 tacggaaaaaacagaagtcaagaaataaacctccaattacaactagcccgctattgtcgtggtgtatt 35675166  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 9903284 - 9903135
Alignment:
Q  82 cgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtttgct 181  Q
    |||| ||||||||| |||||||||||| ||||||||| ||   |||  |||||||| ||||||| |||||||||| ||||| || |||||||||||||      
T  9903284 cgatgctatatagtgtgaaagaaaacacagcgaaagcatcttaaat-taaactaactaatcacagtttgctgtttggcggagtacaaggaggtgtttgtg 9903186  T
Q  182 gaaaaaacgtaaatcaagaaataaacctccaatcaaaactaaccagctatt 232  Q
     |||||||| || |||| ||||||||||||||| |||||||||||||||||    
T  9903185 aaaaaaacggaagtcaaaaaataaacctccaattaaaactaaccagctatt 9903135  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 22621783 - 22621918
Alignment:
Q  87 ctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtttgctgaaaa 186  Q
    ||||||| | |||||||||| ||||||||||| ||| |||||||||| || |||||||| ||||||||||  | || || |||||||||||||| |||||    
T  22621783 ctatataatgtgaaagaaaatatagcgaaagcatcctgaatcaaaaccaatcaatcacagtttgctgtttgacagaatacaaggaggtgtttgcagaaaa 22621882  T
Q  187 aacgtaaatcaagaaataaacctccaatcaaaacta 222  Q
    || | || | || ||||||||||||||  |||||||    
T  22621883 aatggaagtaaaaaaataaacctccaactaaaacta 22621918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 761839 - 761699
Alignment:
Q  79 gagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgttt 178  Q
    ||||||| |||||||||  ||||||||  |||||||||   |||| || ||||||| ||||||   |||||| ||||| | ||| || |||||| ||||     
T  761839 gagcgatgctatatagtgggaaagaaattatagcgaaaatgtcccaaaacaaaactgaccaat---aatttgttgtttggtggaatacaaggagctgtta 761743  T
Q  179 gctgaaaaaacgtaaatcaagaaataaacctccaatcaaaacta 222  Q
    || || |||| | |||||||||||||| ||||||||||||||||    
T  761742 gcggagaaaaaggaaatcaagaaataatcctccaatcaaaacta 761699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 22157929 - 22157756
Alignment:
Q  78 agagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtt 177  Q
    |||||||| | |||||||  ||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| |||| || || || || ||||||||    
T  22157929 agagcgatgccatatagtgggaaagaaaacatagcaaaagcttcccaaatcaaaactaatcaatcacagtttgcagtttggctgaatacaaagaggtgtt 22157830  T
Q  178 tgctgaaaaaacgtaaatcaagaaataaacctccaatcaaaactaaccagctattatcctggtctattcccttg 251  Q
    ||||||||||| | |||||||| |||||||  ||||||||||||||||||||||| || ||||| |||| ||||    
T  22157829 tgctgaaaaaaagaaaatcaaggaataaactaccaatcaaaactaaccagctattgtcgtggtcgattcgcttg 22157756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 41488163 - 41487987
Alignment:
Q  79 gagcgatcctatatagtatgaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgttt 178  Q
    ||||||| ||||||||| ||||| |||| |||| |||||||||||||| ||||||||| ||||||||||||| |||||  |||| || ||||||||||||    
T  41488163 gagcgatgctatatagtgtgaaataaaatatagtgaaagcttcccgaaccaaaactaatcaatcacaatttgatgtttgacggaatacaaggaggtgttt 41488064  T
Q  179 gctg----aaaaaacgtaaatcaagaaataaacctccaatcaaaactaaccagctattatcctggtctattcccttg 251  Q
    | ||    || ||| | |||| ||||||||||||||||||||||||||| |||||||| || || ||||||| ||||    
T  41488063 gttgggaaaataaaaggaaattaagaaataaacctccaatcaaaactaatcagctattgtcgtgctctattcgcttg 41487987  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 35280868 - 35280997
Alignment:
Q  98 gaaagaaaacatagcgaaagcttcccgaatcaaaactaaccaatcacaatttgctgtttagcggattataaggaggtgtttgctgaaaaaacgtaaatca 197  Q
    ||||||||||| || ||||||||||| || |||||||||||||| ||| |||| ||||| | ||| ||  |||| ||| ||||||||||||   |||| |    
T  35280868 gaaagaaaacacagtgaaagcttcccaaagcaaaactaaccaattacagtttgatgtttggtggaatacgaggaagtgcttgctgaaaaaatagaaatta 35280967  T
Q  198 agaaataaacctccaatcaaaactaaccag 227  Q
    ||||||||||||||||||||||||||||||    
T  35280968 agaaataaacctccaatcaaaactaaccag 35280997  T

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