View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17936_low_8 (Length: 289)
Name: NF17936_low_8
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 26765054 - 26765328
Alignment:
| Q |
12 |
aagaacaaccatcaaattttgcaatgggctctcaaaagttgtcaatggcttctcaaagcacaatatctattactaccttcaatttatgagcttgaacctc |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26765054 |
aagaacaaccaccaaattttgcaatgggctctcaaaagttgtcaatggcttctcaaagcacaatatctattactaccttcaatttatgagcttgaacctc |
26765153 |
T |
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| Q |
112 |
aagtaattgatgccttaaaatcaaagctcacaattcccatttactcaattggtccaaacataccttactttaatcttggacacaaatcacattctctaaa |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
26765154 |
aagtaattgatgcattaaaatcaaagctcacaattccaatttacacaattggtccaaacataccttactttaatcttggacacaacttaaattctctaaa |
26765253 |
T |
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| Q |
212 |
tgctactaataatggtgctgaccaaagttacatagattggttaaatctccaaccaaataatggttctgttttgtacat |
289 |
Q |
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| T |
26765254 |
tgctactaataatggtgctgcccaaagttacatagattggttaaatctccaacc---taatggttctgttttgtacat |
26765328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 26785168 - 26785369
Alignment:
| Q |
12 |
aagaacaaccatcaaattttgcaatgggctctcaaaagttgtcaatggcttctcaaagcacaatatctattactaccttcaatttatgagcttgaacctc |
111 |
Q |
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| T |
26785168 |
aagaacaaccaacaaattttgcaatggtctctcaaaagttgtcaatggattctcaaagcacaatatctattactaccttcaatttatgagcttgaacctc |
26785267 |
T |
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| Q |
112 |
aagtaattgatgccttaaaatcaaagctcacaattcccatttactcaattggtccaaacataccttactttaatcttggacacaaatcacattctctaaa |
211 |
Q |
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| T |
26785268 |
aggtaattgatgccttaaaatcaaagctcacaattcccatttactcaattggtccaaacataccttactttaatcttggacacaaatcacattctctaaa |
26785367 |
T |
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| Q |
212 |
tg |
213 |
Q |
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| T |
26785368 |
tg |
26785369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 31005462 - 31005545
Alignment:
| Q |
53 |
tcaatggcttctcaaagcacaatatctattactaccttcaatttatgagcttgaacctcaagtaattgatgccttaaaatcaaa |
136 |
Q |
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| T |
31005462 |
tcaatggattcacaaagcacaatatcttctattcacttcaatttatgagcttgaatctcaagccattgataccttaaaatcaaa |
31005545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 32075549 - 32075468
Alignment:
| Q |
55 |
aatggcttctcaaagcacaatatctattactaccttcaatttatgagcttgaacctcaagtaattgatgccttaaaatcaaa |
136 |
Q |
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||||| ||| ||||||||||||||| || | |||||||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
32075549 |
aatggattcacaaagcacaatatcttctattctcttcaatttatgagcttgaatctcaagccattgatgtcttaaaatcaaa |
32075468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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