View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17936_low_9 (Length: 283)
Name: NF17936_low_9
Description: NF17936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17936_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 11655242 - 11655518
Alignment:
| Q |
1 |
ttatgtcaaatagcatatattaaagtaaataaacaacttatctaattttatgttgaacacaatgaattgcagagtgtgacaaaccaggagctgtttgcca |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11655242 |
ttatgtcaaatagcatat--taaagtaaataaacaacttaaataattttatgttgaacacaatgaattgcagagtgtgacaaaccaggagctgtttgcca |
11655339 |
T |
|
| Q |
101 |
agaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtttctgataacaacctccacatcaat |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
11655340 |
agaccctcgtttcattggtggagatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtttctgacaaaaacctacacatcaat |
11655439 |
T |
|
| Q |
201 |
gcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattttcttcgaca |
279 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
11655440 |
gctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttgaca |
11655518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 11669014 - 11669286
Alignment:
| Q |
5 |
gtcaaatagcatatattaaagtaaataaacaacttatctaattttatgttgaacacaatgaattgcagagtgtgacaaaccaggagctgtttgccaagac |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11669014 |
gtcaaatagcatat--taaagtaaataaacaacttaaataattttatgttgaacacaatgaattgcagagtgtgacaaaccaggagctgtttgccaagac |
11669111 |
T |
|
| Q |
105 |
cctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtttctgataacaacctccacatcaatgccc |
204 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| | |
|
|
| T |
11669112 |
cctcgtttcattggtggagatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtttctgacaaaaacctacacatcaatgctc |
11669211 |
T |
|
| Q |
205 |
atttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattttcttcgaca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
11669212 |
atttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttgaca |
11669286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 11663717 - 11663975
Alignment:
| Q |
22 |
aaagtaaataaacaacttatctaattttatgttgaacacaat-gaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtg |
120 |
Q |
| |
|
||||||||| ||| ||||| || |||| ||| ||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11663717 |
aaagtaaattaactacttaacttatttaatgatgaacgcacttgaattgcagcttgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtg |
11663816 |
T |
|
| Q |
121 |
gtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtttctgataacaacctccacatcaatgcccatttcataggtagaag |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11663817 |
gtgatggaatcactttttactttcatggcaagaaagacaacaacttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaag |
11663916 |
T |
|
| Q |
221 |
aaacgagaacatgaaaagagacttcacatgggtccaatccattgttattttcttcgaca |
279 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
11663917 |
aaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttgaca |
11663975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 62 - 279
Target Start/End: Complemental strand, 7344738 - 7344521
Alignment:
| Q |
62 |
atgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaac |
161 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7344738 |
atgaattgcagcgtgtgacaaaccaggagcggtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaac |
7344639 |
T |
|
| Q |
162 |
aacttctgccttgtttctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatcca |
261 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || || ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7344638 |
aacttctgccttgtttccgataacaacctccacataaacgctcacttcattggtagaagaaacaagaacatgaaaagagacttcacatgggtacaatcca |
7344539 |
T |
|
| Q |
262 |
ttgttattttcttcgaca |
279 |
Q |
| |
|
|||||||| |||| |||| |
|
|
| T |
7344538 |
ttgttattctctttgaca |
7344521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University