View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17937_high_1 (Length: 581)
Name: NF17937_high_1
Description: NF17937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17937_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 15 - 564
Target Start/End: Original strand, 38723014 - 38723558
Alignment:
| Q |
15 |
cacagacctgagtgaccactacaccaaatttgagcattttgaaaatggattacaggtatgaacttaaccaattttcttccttctgtgccaaaatccatcc |
114 |
Q |
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| T |
38723014 |
cacagacctgagtgaccactacaccaaatttgagcattttgaaaatggattacagctatgaacttaaccaattttcttccttctgtgccaaaatccatcc |
38723113 |
T |
|
| Q |
115 |
ccaatgtcaatggattatcttcaatctgatatgtacattaattgattacaccttatttgatcatagtttgaaattggggtcccataatacaactactcca |
214 |
Q |
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| T |
38723114 |
ccaatgtcaatggattatcttcaatctgatatgtacattaattgattacaccttatttgatcatagtttgaaattggggtcccataatacaattactcca |
38723213 |
T |
|
| Q |
215 |
gttcctgatatagttccacaaaaaattagtgcccacttatatttaattctatctactaattttgttcaaagagtagaaaaaataaaatgagcataccctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38723214 |
gttcctgatatagttccacaaaaaattagtgcccacttatatttaattctatctactaattttgttcaaagagtagaaaaaataaaatgagcataccctt |
38723313 |
T |
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| Q |
315 |
caacactgtcatgcgtcagaacatatactaagtctgtctctatttacttataaatgagggttagtttggtaaatggcaatgagtattaacatttaatgtg |
414 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38723314 |
caacactgtcatgcgtcagaacatatact-agtttgtctctatttacttataaatgagggttagtttggtaaatggcaatgagcattaacatttaatgtg |
38723412 |
T |
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| Q |
415 |
tatctatatatttatgtgtgtatgaccttatatatattctagtgcactgtcttgaaacaaatcgcatagtaatattatatactaatattagcattatggt |
514 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38723413 |
tatctatatatttatgtgtgtatgacct----tatattctagtgcactgtcttgaaacaaatcgtatagtaatattatatactaatattagcattatggt |
38723508 |
T |
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| Q |
515 |
tccaagaaggtgtttccaccttattttgttggttctttcatgtttatgct |
564 |
Q |
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| T |
38723509 |
tccaagaaggtgtttccaccttattttgttggttctttcatgtttatgct |
38723558 |
T |
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