View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17937_low_3 (Length: 359)
Name: NF17937_low_3
Description: NF17937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17937_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 543656 - 543337
Alignment:
| Q |
18 |
atattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactattaagaccgatgaactag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
543656 |
atattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtgtttaccttattgttttactattaagactgataaactaa |
543557 |
T |
|
| Q |
118 |
catcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatataacacagctctagttt |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
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| T |
543556 |
catcaatattcaaggttattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcatcggaaagggagtcgtaccatatagcacaactctagttt |
543457 |
T |
|
| Q |
218 |
ttattatgaaaaatgctattgtgcacgacnnnnnnngtcgtgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaat |
317 |
Q |
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| T |
543456 |
ttattatgaaaaatgctattgtgcacgacaaaaaaagtcatgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaat |
543357 |
T |
|
| Q |
318 |
tctcatttgcccaacaatat |
337 |
Q |
| |
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|||||||||||||||||||| |
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| T |
543356 |
tctcatttgcccaacaatat |
543337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 40720904 - 40720710
Alignment:
| Q |
19 |
tattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactattaagaccgatgaactagc |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||| || |||| |
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| T |
40720904 |
tattgatgatcataatgaccatagcaacaaagaatattgatgcttattttttgtttcggtatttactttattgttttactattaatatagataaattagc |
40720805 |
T |
|
| Q |
119 |
atcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatataacacagctcta |
213 |
Q |
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| T |
40720804 |
atcaatattcaggagtattcattgagcaaattgtgtgtagcagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatatagcacagctcta |
40720710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 16085889 - 16085698
Alignment:
| Q |
19 |
tattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactattaagaccgatgaactagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||| |
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| T |
16085889 |
tattgatgatcatagtgaccatagcaacaaagaatattgatacttattttttgttttagtatttactttattgttttactattaatacagataaactagc |
16085790 |
T |
|
| Q |
119 |
atcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatataacacagct |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16085789 |
atcaatattcaaggctattcattgagcaaattatgtgtagcagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatatagcacagct |
16085698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 32722404 - 32722215
Alignment:
| Q |
23 |
gatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactatta--agaccgatgaactagcat |
120 |
Q |
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|
|||||||| ||||| |||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| | | ||| |||||| || |
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| T |
32722404 |
gatgatcacagtgatcatagcaataaagaatattgaagcttattttttattttagtatttactttattgttttact-ttagtatatagataaactagtat |
32722306 |
T |
|
| Q |
121 |
caatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatataacacagctc |
211 |
Q |
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||||||| ||| |||||||||| |||||| |||||| ||||||||||| |||||||| ||||||||| |||| | ||||| |||||||| |
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| T |
32722305 |
caatatttaaggttattcattgaacaaattgtgtgtatcagcgtgtcgtgtaaattcgttggaaagggaatcgtgctatatagcacagctc |
32722215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 35752210 - 35752252
Alignment:
| Q |
295 |
attcaattactttgttttttaattctcatttgcccaacaatat |
337 |
Q |
| |
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||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
35752210 |
attcaattactgtgctttttaattctcatatgcccaacaatat |
35752252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 52769207 - 52769382
Alignment:
| Q |
38 |
catagcaacaaagaatattgatgcttattttttgttttagtatttaccttattgttttactatta--agaccgatgaactagcatcaatattcaagacta |
135 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | | ||| |||||| |||| |||| ||| || |
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| T |
52769207 |
catagcaataaagaatattgatgcttattttttgttttagtatttactttattgttttact-ttagtatatggataaactagtatcagtatttaaggtta |
52769305 |
T |
|
| Q |
136 |
ttcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagggagtcgtaccatataacacagctct |
212 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||||||| ||||| || ||| | |||||||||| |||| |
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| T |
52769306 |
ttcattgagcaagttgtgtgtagcagcgtgtcgtgcaaattcgtcgaaaaggtagacgtgctatataacacaactct |
52769382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 26182765 - 26182648
Alignment:
| Q |
221 |
ttatgaaaaatgctattgtgcacgacnnnnnnngtcgtgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaattct |
320 |
Q |
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||||||||||||||| |||||||||| ||||||||||| ||||| || ||| |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
26182765 |
ttatgaaaaatgctagtgtgcacgacaaaaaaa-tcgtgcaaatcacacgaatcggtataagagtgagcttgccattcaattactgtgttttttaattct |
26182667 |
T |
|
| Q |
321 |
catttgcccaacaatatct |
339 |
Q |
| |
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|||||||||||||||||| |
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| T |
26182666 |
gatttgcccaacaatatct |
26182648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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