View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_high_5 (Length: 333)
Name: NF17938_high_5
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 45881504 - 45881198
Alignment:
| Q |
11 |
gaacctgtggaatagtttggtcctttatagttgtgctttgaaggatgcaccaaccctttgcatatcaagtgccatacttgtcaattttacagtgtgtaat |
110 |
Q |
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| T |
45881504 |
gaaccggttgaatagtttggtcctttatagttgtgctttgaaggatgcaccaaccctttgcatatcaagtgccacacttgtcaattttacagtgtgtaat |
45881405 |
T |
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| Q |
111 |
tacccctatgatatttaagaaattgagctatgcactccaagtattggtgcatttgcttttattggtaaaccgtatcagaaattatttgggagcaggcttt |
210 |
Q |
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| T |
45881404 |
tactcctatgatatttaagaaattgagctatgcactccaagtattggtgcatttgcttttattggtaaaccgtatcagaaattatttgggagcagtcttt |
45881305 |
T |
|
| Q |
211 |
cttatgttaatcatgtagatatttatgccgaaattcggtcaatggaaatgaagcctccctcggtttctattcagctggttgtttgagctcactaatacaa |
310 |
Q |
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| T |
45881304 |
cttatgttaatcatgtagatatttatgccgaaattcggtcaatggaaatgaagcctccctcggtttctattcagctggttgtttgagctcactaatacaa |
45881205 |
T |
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| Q |
311 |
aatcatt |
317 |
Q |
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| T |
45881204 |
aatcatt |
45881198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 45856461 - 45856165
Alignment:
| Q |
20 |
gaatagtttggtcctttatagttgtgctttgaaggatgcaccaaccctttgcatatcaagtgccatacttgtcaattttacagtgtgtaattacccctat |
119 |
Q |
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| T |
45856461 |
gaatagtttggtcctttacaattgtgctttgaaggatgcagtaaccctttgcatatcaagtgccacactagtcaattttacagtgcgtagttactcctat |
45856362 |
T |
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| Q |
120 |
gatatttaagaaattgagctatgcactccaagtattggtgcatttgcttttattggtaaaccgtatcagaaattatttgggagcaggctttcttatgtta |
219 |
Q |
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| T |
45856361 |
gattattacaaaatcgagctctgcgctccatgtcttggtacatttgctttcattggtaaaccatttcagaaattatctgggagcagtctttcttatgtca |
45856262 |
T |
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| Q |
220 |
atcatgtagatatttatgccgaaattcggtcaatggaaatgaagcctccctcggtttctattcagctggttgtttgagctcactaatacaaaatcatt |
317 |
Q |
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| T |
45856261 |
agcatgtagatattgatgcagagattctgtcaatggaaatggagcct-ccactgtttctactaaactggttgtttaagctcactaatacaaaatcatt |
45856165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 20981237 - 20981137
Alignment:
| Q |
132 |
attgagctatgcactccaagtattggtgcatttgcttttattggtaaaccgtatcagaaattatttgggagcaggctttcttatgttaatcatgtagata |
231 |
Q |
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| T |
20981237 |
attgagctatgcactccaagtctttgtgcgtttacttttaatggtactccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagata |
20981138 |
T |
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| Q |
232 |
t |
232 |
Q |
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| T |
20981137 |
t |
20981137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 38141703 - 38141532
Alignment:
| Q |
62 |
aaccctttgcatatcaagtgccatacttgtcaattttacagtgtgtaattacccctatgatatttaagaaattgagctatgcactccaagtattggtgca |
161 |
Q |
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|||||| |||||||| ||||| | |||||||| |||||| ||| ||| | || |||||||| |||| ||||||||||| || ||||||||| ||||| || |
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| T |
38141703 |
aaccctctgcatatccagtgcaacacttgtcagttttactgtgcgtagtcactcctatgatttttatgaaattgagctttgtactccaagtcttggtaca |
38141604 |
T |
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| Q |
162 |
tttgcttttattggtaaaccgtatcagaaattatttgggagcaggctttcttatgttaatcatgtagatatt |
233 |
Q |
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| T |
38141603 |
tttggatttacaggtaaatcgtataagaaaatctttgggagcggtctttcttgtgttaagcatgtagatatt |
38141532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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