View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_high_6 (Length: 309)
Name: NF17938_high_6
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_high_6 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 115763 - 116047
Alignment:
| Q |
16 |
attctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttaga |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115763 |
attctcaagaagcaacaaatcccgctggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttaga |
115862 |
T |
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| Q |
116 |
aacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtatttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115863 |
aacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtatttttt |
115962 |
T |
|
| Q |
216 |
gctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatacctatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
115963 |
gctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatg |
116047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 606714 - 606448
Alignment:
| Q |
16 |
attctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||| |||||| |||| || ||||| ||| |
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| T |
606714 |
attctcaagaagcaacaaatcccgttggatacttttgcttacacaatgttgagttactatgtaatcatctttgtgttcccatctttttttctctctaaga |
606615 |
T |
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| Q |
116 |
aacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtatttttt |
215 |
Q |
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| T |
606614 |
aacaactccatgatgaacacagcatccaatagtatcatatcaacaaattgtttctggctaatatcaacaaaaattttctggtaacagtggcgaatattat |
606515 |
T |
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| Q |
216 |
gctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaa |
282 |
Q |
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| T |
606514 |
gttcttcttgttcaaggaaagttttgtagttcattaaatcacttttttggtctaggcgattccaaaa |
606448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 178024 - 177746
Alignment:
| Q |
16 |
attctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttaga |
115 |
Q |
| |
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|||||||||||||||||| || | || ||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||||| | |
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| T |
178024 |
attctcaagaagcaacaagtcatgctgaatatttttacttaaacaaagttgagttactatataatcatctttgtgttcccattttttagcttctcttaaa |
177925 |
T |
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| Q |
116 |
aacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtatttttt |
215 |
Q |
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|||| |||||||||||||||| |||||| | |||||||||||| ||||| ||| | ||||||| | || |||||||||||||| |||| || |||| |
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| T |
177924 |
aacagctccatgatgaacacaacatccaacaatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttt |
177825 |
T |
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| Q |
216 |
gctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaata |
294 |
Q |
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| T |
177824 |
tctcttcttgttctaggaaagctttgtagttaattaaatcatttttttcttctatgcgattccaaaaaaaatgaaaata |
177746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 10155 - 10439
Alignment:
| Q |
16 |
attctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttaga |
115 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
10155 |
attctcaataagcaacaaatccctttgaatacttctactcacacaaagttgagttataatataatcatctttgtgttcccattttttgttttctcttaaa |
10254 |
T |
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| Q |
116 |
aacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtatttttt |
215 |
Q |
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|| |||||||||||||| ||||||||||| |||||||| ||||||| ||| ||| || ||||||| ||| ||||||||||||||||||||||| || | |
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| T |
10255 |
aataactccatgatgaagacagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattct |
10354 |
T |
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| Q |
216 |
gctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatacctatg |
300 |
Q |
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| T |
10355 |
gatcttcttgttgaagaaattctttgtagttcatcaaatcatttttgctgtccaaacgattccagaaataatgaaaatacctatg |
10439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 23609 - 23893
Alignment:
| Q |
16 |
attctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattttttattttctcttaga |
115 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
23609 |
attctcaataagcaacaaatccctttgaatacttctactcacacaaagttgagttataatataatcatctttgtgttcccattttttgttttctcttaaa |
23708 |
T |
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| Q |
116 |
aacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtatttttt |
215 |
Q |
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|| |||||||||||||| ||||||||||| |||||||| ||||||| ||| ||| || ||||||| ||| ||||||||||||||||||||||| || | |
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| T |
23709 |
aataactccatgatgaagacagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattct |
23808 |
T |
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| Q |
216 |
gctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatacctatg |
300 |
Q |
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| |||||||||||||| || ||||||||||||| |||||| |||| |||| | |||||||| |||||||| ||||||||||| |
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| T |
23809 |
gatcttcttgttgaagaaattctttgtagttcatcaaatcatttttgctgtccaaacgattccagaaataatgaaaatacctatg |
23893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 37438553 - 37438640
Alignment:
| Q |
174 |
tgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
261 |
Q |
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|||||| || ||||||||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||||| ||||||||||| |
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| T |
37438553 |
tgatatttgagaatttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatcactttt |
37438640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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