View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_low_1 (Length: 759)
Name: NF17938_low_1
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 10 - 672
Target Start/End: Original strand, 40291248 - 40291909
Alignment:
| Q |
10 |
catcatcatctttagaggcctgatcatacaatttaaaaattattcttgtaaaagaagggggtttgaaacagcaaatgattagtattattaaccacagttg |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40291248 |
catcatcatctttagaggcctgatcatacaattttaaaattattattgtaaaagaagggggtttgaaacagcaaatgattagtattattaaccacagttg |
40291347 |
T |
|
| Q |
110 |
ataaaatgtaaatagaatgcagtctttcttttgaaccaaaacgtctataataataatatcattttcatatgttgtaactctaatgcatttcagtttttag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40291348 |
ataaaatgtaaatagaatgcagtctttcttttgaaccaaaacgtctataataataatataattttcatatgttgtaactctaatgcatttcagtttttag |
40291447 |
T |
|
| Q |
210 |
aaatagcaatggtaccatccgagtttgaatactcataatggggagttttaaggaaatgattggtccaacacgtaacttgttatattgcaccattagcaat |
309 |
Q |
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| T |
40291448 |
aaatagcaatggtaccatccgagtttgaatactcataatggggagttttaaggaaatgattggtcca-cacgtaacttgttatattgcacctttagcaat |
40291546 |
T |
|
| Q |
310 |
ctactttgcaacactccaaataccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagttattaaattacctcaccaa |
409 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40291547 |
ctactttgcaacactctaaataccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagtaattaaattacctcaccaa |
40291646 |
T |
|
| Q |
410 |
caacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatgtcaaaataagcatgatcagtgct |
509 |
Q |
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| T |
40291647 |
caacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatgtcaaaataagcatgatcagtgct |
40291746 |
T |
|
| Q |
510 |
tttattgtttgttgtttgcagggaacagaagagattggacctaacaatctcaccttttcatcttcgagatagctcgatatttcagacggctcaaattttg |
609 |
Q |
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| T |
40291747 |
tttattgtttgttgtttgcagggaacagaagagattggacctaacaatctcaccttttcatcttcgagatagctcgatatttcagacggctcaaattttg |
40291846 |
T |
|
| Q |
610 |
atcctacagcaggtaatacaaaatcagtggcaccacatgcacacgatcagtcccgtcatcctt |
672 |
Q |
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| T |
40291847 |
atccttcagcaggtaatacaaaatcagtggcaccacatgcacacgatcagtcccgtcatcctt |
40291909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 486
Target Start/End: Original strand, 40271730 - 40271920
Alignment:
| Q |
294 |
ttgcaccattagcaatctactttgcaacactccaaataccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagttat |
393 |
Q |
| |
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||||||||| || |||||||||||||||||| ||||| |||||| | || |||||||||| ||| ||| ||||| |||||| | ||| ||| | || |
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| T |
40271730 |
ttgcaccataaggaatctactttgcaacacttcaaatgccaattataatgaaattatgtactatatagt--ataaaactaactcagtgcttcaaactaat |
40271827 |
T |
|
| Q |
394 |
taaattacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatg |
486 |
Q |
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|| ||||||| |||||||||| | ||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||| ||| ||||||| |
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| T |
40271828 |
tagattacctgaccaacaacagttaaggaagttccaaccggaagtacccgttcaatcctcttgaagccaagaatctgaaaatattgtttcatg |
40271920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 40256991 - 40257072
Alignment:
| Q |
392 |
attaaattacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaa |
473 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || | |||||| |||||||| |
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| T |
40256991 |
attagattacctcaccaacaacagtcaaggaagttccaactggaagtacccgttcaattcttttaactccaagcatctgaaa |
40257072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 301 - 461
Target Start/End: Original strand, 40265630 - 40265787
Alignment:
| Q |
301 |
attagcaatctactttgcaacactccaaa--taccaattgtcataaaattatgtaatatgtagagaataaatctaactatattcttgaaagttattaaat |
398 |
Q |
| |
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||||| ||||||||||||||||||| ||| ||| ||| | | |||||||||||||| |||| || |||||| |||||||||| | |||| || |
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| T |
40265630 |
attagaaatctactttgcaacactcaaaaaatactaatcatactgaaattatgtaatatatagaaaa-----ctaactgcattcttgaaactgattagat |
40265724 |
T |
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| Q |
399 |
tacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtcc |
461 |
Q |
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|||||||||||||||| ||||||||||||||| | ||||| ||| |||||||||||| ||||| |
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| T |
40265725 |
tacctcaccaacaacagtcaaggaagttccaaacggaagtgcccattcaattctcttaagtcc |
40265787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 40283782 - 40283832
Alignment:
| Q |
12 |
tcatcatctttagaggcctgatcatacaatttaaaaattattcttgtaaaa |
62 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||| |||||||||||| |
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| T |
40283782 |
tcatcatctttagaggcctgatcatacagttaaaaaataattcttgtaaaa |
40283832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 40284382 - 40284480
Alignment:
| Q |
397 |
attacctcaccaacaacattcaaggaagttccaaccagaagtacccgttcaattctcttgagtccaaggatctgaaagtatgatttcatgtcaaaataa |
495 |
Q |
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||||||| |||||||||| | || | |||||||||| ||||||| |||||||| ||||| | ||| || ||||||||||||||||||| |||||||| |
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| T |
40284382 |
attacctgaccaacaacagttaaagcagttccaaccggaagtactcgttcaatcctcttcaatcccttgacctgaaagtatgatttcatgacaaaataa |
40284480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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