View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_low_2 (Length: 636)
Name: NF17938_low_2
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 61 - 620
Target Start/End: Original strand, 41899013 - 41899576
Alignment:
| Q |
61 |
agttttcccatatactatatttattcatttgttaagttccttgctatatccacatgtgatatctacaaagagagcatcatatgtacatacacttgataga |
160 |
Q |
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| T |
41899013 |
agttttcccatatactatatttattcatttgttaagttccttgctatatccacacgtgatatctacaa-gagagcatcatatgtacatacacttgataga |
41899111 |
T |
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| Q |
161 |
aaataagttatataggggcgtgagagcaccaataatggactcaattctagagaatgtccaaattcccacaccttgacatgatgtggcaactgcagcactg |
260 |
Q |
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| T |
41899112 |
aaataagttatataggggcgtgagagcaccaataatggactcaattctagagaatgtccaaattcccacaccttgacatgatgtggcaactgcagcactg |
41899211 |
T |
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| Q |
261 |
caccgaagcaatagaacttacactttcatctcgtaatattatctttttgatttctatatttcatttccgtaaccactgccataaaaaatgcatttttata |
360 |
Q |
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| T |
41899212 |
caccgaagcaatagaacttacactttcatctggtaatattatctttttgatttctatatttcatttccgtaaccactgccataaaaaatgcatttttata |
41899311 |
T |
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| Q |
361 |
ctaacggtcgcataatggatttgtcatgtgtgattatgaaccttaagcattg-------------ccattatatattttatatttaaacttaaggcctgc |
447 |
Q |
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| T |
41899312 |
ctaactgtcgcataatggatttgtcatgtgtgattatgaaccttaagcattgcttgattaaattaccattatatattttatatttaaacttaaggcctgc |
41899411 |
T |
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| Q |
448 |
aaatattattttatagtcatgaggggaatcacttgaattgtttggataaattggattagattaaatttttatggg-nnnnnnntaattctattagttnnn |
546 |
Q |
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| T |
41899412 |
aaatattattttatagtcatgaaaggaatcacttgaattgt---------ttggattagattaaatttttatgggaaaaaaaataattctattagttaaa |
41899502 |
T |
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| Q |
547 |
nnnngtctttcgaatgagcagaatagacttaacaacagttccaatgtacaatataatacgaagaatgtttagaa |
620 |
Q |
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| T |
41899503 |
aaaagtctttcgaatgagcagaatagacttaacaacagttccaatatacaatataatacgaagaatgtttagaa |
41899576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 41892693 - 41892743
Alignment:
| Q |
17 |
acacattagtggttgtaaattatttagaactttaaaatatatccagttttc |
67 |
Q |
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| T |
41892693 |
acacattagtgattgtaaattatttagaactttaaaatatattcagttttc |
41892743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 2738015 - 2737965
Alignment:
| Q |
17 |
acacattagtggttgtaaattatttagaactttaaaatatatccagttttc |
67 |
Q |
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| T |
2738015 |
acacattagtggttgtaaattatttagaactttgaaatatattcagttttc |
2737965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2410235 - 2410285
Alignment:
| Q |
17 |
acacattagtggttgtaaattatttagaactttaaaatatatccagttttc |
67 |
Q |
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| T |
2410235 |
acacattagtggttgtaaattatttagaactttaaaatacattcagttttc |
2410285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 1302466 - 1302410
Alignment:
| Q |
17 |
acacattagtggttgtaaattatttagaactttaaaatatatccagttttcccatat |
73 |
Q |
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| T |
1302466 |
acacattagtggttgtaaattattcagaaatttgaaatatattcaggtttcacatat |
1302410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7019981 - 7019941
Alignment:
| Q |
18 |
cacattagtggttgtaaattatttagaactttaaaatatat |
58 |
Q |
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| T |
7019981 |
cacattagtggttgtaaattattcagaactttgaaatatat |
7019941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3008984 - 3009025
Alignment:
| Q |
25 |
gtggttgtaaattatttagaactttaaaatatatccagtttt |
66 |
Q |
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| T |
3008984 |
gtggttgtaaattattgagaactttgaaatatattcagtttt |
3009025 |
T |
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