View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_low_4 (Length: 354)
Name: NF17938_low_4
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 40 - 346
Target Start/End: Original strand, 13090712 - 13091018
Alignment:
| Q |
40 |
cattttgagaggggcttgcgcaatattatataccagatgtaaatatgtaatgtatgagtgtgtgttttgggactaatttagaaatgaaattctgtatagt |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13090712 |
cattttgagaggggcttgcgcaatattatataccagatgtaaatatgtaatgtatgagtgtgtgttttgggactaatttagaaatgaaattctgtatagt |
13090811 |
T |
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| Q |
140 |
gttttagtacactccaaaagaaagctattttcggttatttaattaagaaaaatgacctggagtcaaatacacatgtctaaaagtctatctttagtcaata |
239 |
Q |
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| T |
13090812 |
gttttagtacactccaaaagaaagctattttcggttatttaattaagaaaaatgacctggagtcaaatacacatgtctaaaagtctatctttagtcaata |
13090911 |
T |
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| Q |
240 |
catatgtataattctctcatacaaatttccttttaagatagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaaatcctatatcat |
339 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13090912 |
catatgtataattctctcatacaaatttccttttaaggtagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaaatcctatatcat |
13091011 |
T |
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| Q |
340 |
tcatctc |
346 |
Q |
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| T |
13091012 |
ttatctc |
13091018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 25517666 - 25517591
Alignment:
| Q |
252 |
tctctcatacaaatttccttttaagatagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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| T |
25517666 |
tctctcacacaaatttcattttaaggtcgcaaagttgaggatgaacctatagaagctgcaatttattttgaatgaa |
25517591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 26050335 - 26050262
Alignment:
| Q |
254 |
tctcatacaaatttccttttaagatagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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| T |
26050335 |
tctcacacaaatttcattttaaggtcgcaaagttgaggatgaacctatagaagctgcaatttattttgaatgaa |
26050262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 26071504 - 26071431
Alignment:
| Q |
254 |
tctcatacaaatttccttttaagatagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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| T |
26071504 |
tctcacacaaatttcattttaaggtcgcaaagttgaggatgaacctatagaagctgcaatttattttgaatgaa |
26071431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 26086631 - 26086556
Alignment:
| Q |
252 |
tctctcatacaaatttccttttaagatagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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| T |
26086631 |
tctctcacataaatttcattttaagttggcaaagttgaggatgaacctatagaagcttcaatttcttttgaatgaa |
26086556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 25525869 - 25525794
Alignment:
| Q |
252 |
tctctcatacaaatttccttttaagatagcaaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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||||||| | ||||||||||||||| ||||| ||||| |||||| ||| ||||||| ||||||||||||||||| |
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| T |
25525869 |
tctctcacagaaatttccttttaagggggcaaagttgaggatgaacttatagaagctgaaatttcttttgaatgaa |
25525794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 26048331 - 26048285
Alignment:
| Q |
281 |
caaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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|||| ||||| |||||||||| |||||| |||||||||||||||||| |
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| T |
26048331 |
caaagttgaggatgaacctatagaagcttcaatttcttttgaatgaa |
26048285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 26055411 - 26055365
Alignment:
| Q |
281 |
caaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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|||| ||||| |||||||||| |||||| |||||||||||||||||| |
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| T |
26055411 |
caaagttgaggatgaacctatagaagcttcaatttcttttgaatgaa |
26055365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 26069500 - 26069454
Alignment:
| Q |
281 |
caaatttgagcatgaacctatggaagctgcaatttcttttgaatgaa |
327 |
Q |
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| T |
26069500 |
caaagttgaggatgaacctatagaagcttcaatttcttttgaatgaa |
26069454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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