View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_low_5 (Length: 342)
Name: NF17938_low_5
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_low_5 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 752358 - 752029
Alignment:
| Q |
1 |
ccatcaacatgatgagtccaattaccatcaatctgcttgcaagggtaagactccacatggtagaagctttgtgcactagaaaccataggagaaggttgag |
100 |
Q |
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| T |
752358 |
ccatcaacatgatgagtccaattaccatcaatctgcttgcaagggtaagactccacatggtagaagctttgtgcactagaaaccataggagaaggttgag |
752259 |
T |
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| Q |
101 |
agctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatgg |
200 |
Q |
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| T |
752258 |
agctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatgg |
752159 |
T |
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| Q |
201 |
aggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttatcaatcttg |
300 |
Q |
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| T |
752158 |
tggataaatgtgtgcttgagacatgttgttttgcgggagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttatcaatcttg |
752059 |
T |
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| Q |
301 |
tttgtttcaagagctattgattttccccta |
330 |
Q |
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| T |
752058 |
tttgtttcaagagctattgattttccccta |
752029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 7327174 - 7327338
Alignment:
| Q |
100 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
199 |
Q |
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| T |
7327174 |
gagctttgcgcattggaaatcatagaagaaggttgagagctttgtccgagttgaagttgccaaaaccctaatggggttttatcattaatattcatcaatg |
7327273 |
T |
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| Q |
200 |
gaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgag |
264 |
Q |
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| T |
7327274 |
gaggatgaatttttgcttcaaacatgttgttttgcatgagattgaagtagctacttggctttgag |
7327338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 292
Target Start/End: Complemental strand, 746329 - 746137
Alignment:
| Q |
100 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
199 |
Q |
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| T |
746329 |
gagctttgtgcactggaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatg |
746230 |
T |
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| Q |
200 |
gaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttat |
292 |
Q |
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| T |
746229 |
gagagtaaattttaacttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttat |
746137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 746333 - 746285
Alignment:
| Q |
60 |
gtagaagctttgtgcactagaaaccataggagaaggttgagagctttgt |
108 |
Q |
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| T |
746333 |
gtaggagctttgtgcactggaaaccataagagaatgttgagagctttgt |
746285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 327
Target Start/End: Original strand, 51792294 - 51792491
Alignment:
| Q |
130 |
ggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatggaggataaatgtgtgcttgagacatgttgt |
229 |
Q |
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||||||||||||||||| ||| |||||||||||||||||| |||||||||||| | |||||||||| |||||||||| | ||||||||||||||| | |
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| T |
51792294 |
ggttgagagctttgtcccgattgaagtggccaaaaccctaaggggtttttatcactaatattcatcattggaggataagtttgtgcttgagacatggaat |
51792393 |
T |
|
| Q |
230 |
tttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttatcaatcttgtttgtttcaagagctattgattttccc |
327 |
Q |
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| T |
51792394 |
tttgcatgagattgaagtagtaacttggatttggggtcaaggaaggagtactgataagtttatctaccttgtgtgattcatgagctattgtttttccc |
51792491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 2262 - 2404
Alignment:
| Q |
187 |
atattcatcaatggaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaa |
286 |
Q |
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||||| ||||||||||| ||||| | ||||||||||||||| ||||| || ||||||| | |||||||||||||| |||||| |||| |||| ||| |
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| T |
2262 |
atattaatcaatggaggttaaatttctgcttgagacatgtt---ttgcatgaaattgaagcaattacttggatttgaggccaagtgaggaatactaataa |
2358 |
T |
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| Q |
287 |
ggttatcaatcttgtttgtttcaagagctattgattttcccctatg |
332 |
Q |
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| T |
2359 |
gtttatcaaccttgtgtgattcatgagctattgcttttcccttatg |
2404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 7773 - 7915
Alignment:
| Q |
187 |
atattcatcaatggaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaa |
286 |
Q |
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||||| ||||||||||| ||||| | ||||||||||||||| ||||| || ||||||| | |||||||||||||| |||||| |||| |||| ||| |
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| T |
7773 |
atattaatcaatggaggttaaatttctgcttgagacatgtt---ttgcatgaaattgaagcaattacttggatttgaggccaagtgaggaatactaataa |
7869 |
T |
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| Q |
287 |
ggttatcaatcttgtttgtttcaagagctattgattttcccctatg |
332 |
Q |
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| T |
7870 |
gtttatcaaccttgtgtgattcatgagctattgcttttcccttatg |
7915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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