View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17938_low_9 (Length: 272)
Name: NF17938_low_9
Description: NF17938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17938_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 10448453 - 10448195
Alignment:
| Q |
14 |
cagagacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttctcatgttgtaacagtcaaaccccaaaataacctcg |
113 |
Q |
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| T |
10448453 |
cagagacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttctcatgttgtaacagtcaaaccccaaaataacctca |
10448354 |
T |
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| Q |
114 |
gtaatttattcacagtgttataaacacactgaaatacaagtttataatcttcaatactaacacatgccaaaaactaataaataaataaataaggttgtta |
213 |
Q |
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| T |
10448353 |
gtaatttattcacagtgttataaacacactgaaatacaagtttataatcttcaatactaacacatgccaaaaacaaataaataaataaataaggttgtta |
10448254 |
T |
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| Q |
214 |
actacttacaacttgtaaaagggaacatttttatgtaacttcaaaaataagttaagtga |
272 |
Q |
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| T |
10448253 |
actacttacaacttgtaaaagggaacatttttatgtaacttcaaaaataagttaagtga |
10448195 |
T |
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