View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_high_13 (Length: 225)
Name: NF17939_high_13
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_high_13 |
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| [»] scaffold0285 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 17962940 - 17962885
Alignment:
| Q |
147 |
atcaagcctccaaatgcccctagagttattgaagttatctggtttcctccaatttt |
202 |
Q |
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| T |
17962940 |
atcaagcctcctaatgcccctagagttattgaagttatctggactcctccaatttt |
17962885 |
T |
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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 815629 - 815574
Alignment:
| Q |
147 |
atcaagcctccaaatgcccctagagttattgaagttatctggtttcctccaatttt |
202 |
Q |
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| T |
815629 |
atcaagcctcctaatgcccctagagttattgaagttatctggactcctccaatttt |
815574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 28688478 - 28688423
Alignment:
| Q |
147 |
atcaagcctccaaatgcccctagagttattgaagttatctggtttcctccaatttt |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28688478 |
atcaagcctcctaatgcccctagagttattgaagttatctggactcctccaatttt |
28688423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 14873 - 14845
Alignment:
| Q |
177 |
gaagttatctggtttcctccaattttcaa |
205 |
Q |
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| T |
14873 |
gaagttatctggtttcctccaattttcaa |
14845 |
T |
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