View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17939_high_3 (Length: 469)
Name: NF17939_high_3
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 10448125 - 10447666
Alignment:
| Q |
1 |
cattgaaaattaaggggctcttacaaattgaatgatagtagcacactagcac--------cagttgataatgatactcctgcaatcttcatcaacaagaa |
92 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10448125 |
cattgaaaattaaagggctcttacaaattgaatgatagtagcacactagcacgctagcaccagttgataatgatactcctgcaatcttcatcaacaagaa |
10448026 |
T |
|
| Q |
93 |
aaccacaaaatgacccagaagaaagaaaaaagaatagattatttattattcttgaagcacccatttacaagccatgttgaatatttaactctaaaatcat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10448025 |
aaccacaaaatgacccagaagaaagaaaaaagaatagattatttattattcttgaagcacccatttacaagccatgttgaatatttaactctaaaatcat |
10447926 |
T |
|
| Q |
193 |
caaaagcaaagaaagcaacattttttaagcattgagaatccaaagcatattaaattgggaattgggttttctacaattaagcaaatcaaagtcaaattga |
292 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10447925 |
caaaagcaaagaaagcaacaatttttaagcattgagaatccaaagcatattaaattgggaattgggttttctacaattaagcaaatcaaagtcaaattga |
10447826 |
T |
|
| Q |
293 |
aatataaaaggaacttacaaattattacagtatgtttaagatgctttctttcattacaagccacatgtttctaaatggaatcgaatctgtgcaattaaag |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10447825 |
aatataaaaggaacttacaaattattacagtatgtttaagatgctttctttcattacaagccacatgtttctaaatggaatcgaatctgtgcaattaaag |
10447726 |
T |
|
| Q |
393 |
agtgaaacattgaagaaagaaccttaaaaacataagagggtcatggaaattactacaatt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10447725 |
agtgaaacattgaagaaagaaccttaaaatcataagagggtcatggaaattactacaatt |
10447666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University