View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_high_4 (Length: 466)
Name: NF17939_high_4
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 95 - 453
Target Start/End: Original strand, 25174924 - 25175282
Alignment:
| Q |
95 |
gtatcgacaacttcaacaagatcaatcattgatggctcagatcttaatgttgatctcttagaagcttgatgagttcgtctacctgatgataaaccataat |
194 |
Q |
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| T |
25174924 |
gtatcgacaacttcaacaagatcaatcattgatggctcagatcttaatgttgatctcttagaagcttgatgagttcgtctacctgatgataaaccataat |
25175023 |
T |
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| Q |
195 |
acaaagaactctctcctttcttaaaatgttcaatgtttcttttactagtgaactcattttgaaaaacttctgataaatccttagctttttcttctaatcc |
294 |
Q |
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| T |
25175024 |
acaaagaactctctcctttcttaaaatgttcaatgtttcttttactagtgaactcattttgaaaaacttctgataaatccttagctttttcttctaatcc |
25175123 |
T |
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| Q |
295 |
accatacacatcccattttttctctctaaaatttcttcttctacttgttgcattttgtgatggatacctaaaaagaatttgttcaggtcttacaatattg |
394 |
Q |
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| T |
25175124 |
accatacacatcccattttttctctctcaaatttctccttctacttgttgcattttgtgatggatacctaaaaagaatttgttcaggtcttacaatattg |
25175223 |
T |
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| Q |
395 |
tttggtaatggtatctttggttgttgaacttttggttcaactttcttttcttgctcttc |
453 |
Q |
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| T |
25175224 |
tttggtaatggtatctttggttgttgaacttttggttcaactttcttttcttgctcttc |
25175282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 29591908 - 29592005
Alignment:
| Q |
264 |
ctgataaatccttagctttttcttctaatccaccatacacatcccattttttctctctaaaatttcttcttctacttgttgcattttgtgatggatac |
361 |
Q |
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| T |
29591908 |
ctgataaattcttagctttttgttctaaatcgccatatacatccaatttcttcccggtgaaatttcttcttctacttgttgcattttgtgatggatac |
29592005 |
T |
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