View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_high_7 (Length: 352)
Name: NF17939_high_7
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 38892750 - 38892421
Alignment:
| Q |
17 |
aatatttcatacatgtaatttacttattataactagccagtagtttataggatgaggtgatcattttccttcgtatgagtatgagtcaacgcatattttt |
116 |
Q |
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| T |
38892750 |
aatatttcatacatgtaatttacttattataactagctagtagtttataggatgaggtgatcattttccttcgtatgagt------caacgcatattttt |
38892657 |
T |
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| Q |
117 |
ggaaaaaggttattctggattgtcctattaggggtgtgtataccataattccatctaaattaatcccaatgccactttgattagctcatgtcctaaaatt |
216 |
Q |
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| T |
38892656 |
ggaaaaaggttattctggattgtcctattaagggtgtttataccataattccatctaaattaatcccaatgccactttgattagctcatgtcctaaaatt |
38892557 |
T |
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| Q |
217 |
ttggtcgttatgattagttaatttccaactgtacactctatttctgctcatctaatctcttattcccaacttctaataaaatagttggttgattatccag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892556 |
ttggtcgttatgattagttaatttccaactgtacactctatttctgctcatctaatctcttattcccaacttctaataaaatagttggttgattatccag |
38892457 |
T |
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| Q |
317 |
aaatattctttgattaatttagattttgtttgttaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38892456 |
aaatattctttgattaatttagattttgtttgttaa |
38892421 |
T |
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