View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_low_1 (Length: 587)
Name: NF17939_low_1
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 187 - 568
Target Start/End: Original strand, 8156996 - 8157369
Alignment:
| Q |
187 |
ttgtttagggtagtgatttgtttaattctccatgtgactacatattgagtgattttggttgctcacttaaattggatcttgtggcaagtattacaaattt |
286 |
Q |
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| T |
8156996 |
ttgtttagggtagtgatttgtttaattctccatgtgactgcatattgagtgattttggttgctcgcttaaattggatcttgtggcaagtattacaaattt |
8157095 |
T |
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| Q |
287 |
agagttagtgaaaatatagttagttaataagggtttgttatcaggttgttagtttgttaacttcatacaagatctatatatagcacatctcatatactca |
386 |
Q |
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| T |
8157096 |
agagttagtgaaaatatagttagttaataagggtttgttattaggttgttagtttgttaacttcatacaagatctatatatagcacatctcatatactca |
8157195 |
T |
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| Q |
387 |
tatatcatcttttaatcaaaataattaatacgaatttgaagaaatgttcattttctatggaactttcagacttatttaaaactgtacaaagaaatgaaac |
486 |
Q |
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| T |
8157196 |
tatatcatcttttaatcaaaataattaatacgaatttgaagaaatgt--------tatggaactttcagacttatttaaaactgtccaaagaaatgaaac |
8157287 |
T |
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| Q |
487 |
tctcatgttctaaagtattattgcaacaaagctacaaaatgtagctttaactattgactagcatgcgttagaatgtgcttcc |
568 |
Q |
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| T |
8157288 |
tctcatgttctaaagtattattgcaacaaagctacaaaatgtagctttaactattgactagcatgcgttagaatgtgcttcc |
8157369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 8156368 - 8156545
Alignment:
| Q |
10 |
acatcatcacagagacttgtgggatgatctaacattaaaatgatacgactactctagctctctcataaacctaatattgacccctggagaaattcttcta |
109 |
Q |
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| T |
8156368 |
acatcatcacagagacttgtgggatgatctaacattaa--tgatacgactactctaactctctcataaacctaatattgacccctggagaaattcttcta |
8156465 |
T |
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| Q |
110 |
ctttgtaacatgattcaaggtttattggtgaaaattttggtgaagttttgtagggagttagggtcacttgcttctatttg |
189 |
Q |
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| T |
8156466 |
ctttgtaacatgattcaaggtttattggtgaaaattttggtgaagttttgtagggaattagggtcacttgcttctatttg |
8156545 |
T |
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